Detail information of GWHGAAZE019214


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17230.14.0288E-161unnamed protein product [Coffea canephora]
Swissprottr|Q9SUJ1|SYP43_ARATH3E-147Syntaxin-43
trEMBLtr|A0A068V923|A0A068V923_COFCA2E-161Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313|EMBL:CDP17230.1}
TAIR10AT3G05710.24E-112syntaxin of plants 43

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3421357534217639-
GWHAAZE00000005mRNA3421357534217639-
GWHAAZE00000005exon3421357534213682-
GWHAAZE00000005exon3421420934214289-
GWHAAZE00000005exon3421439034214455-
GWHAAZE00000005exon3421457134214648-
GWHAAZE00000005exon3421599234216069-
GWHAAZE00000005exon3421629334216382-
GWHAAZE00000005exon3421734634217639-
GWHAAZE00000005CDS3421734634217639-
GWHAAZE00000005CDS3421629334216382-
GWHAAZE00000005CDS3421599234216069-
GWHAAZE00000005CDS3421457134214648-
GWHAAZE00000005CDS3421439034214455-
GWHAAZE00000005CDS3421420934214289-
GWHAAZE00000005CDS3421357534213682-
Transcript Sequence

Network for GWHGAAZE019214

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05739.20SNARE2042565.00E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08489STX16 SNARE interactions in vesicular transport map04130

Gene Ontology

GO term OntologyName
GO:0016192biological_processvesicle-mediated transport
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0005484molecular_functionSNAP receptor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.697
SRR3591706second leaf4.951
SRR3591707mature leaf2.915
SRR3591708Shoot apex4.531
SRR3591709Stem4.962
SRR3591710White floral bud6.757
SRR3591711White flower6.886
SRR3591712Green floral bud7.393
SRR3591713Yellow flower6.091
SRP173429 SRR8316895Juvenile bud stage 3.953
SRR8316896Juvenile bud stage 5.425
SRR8316897Juvenile bud stage 3.072
SRR8316894Third green stage 3.465
SRR8316900Third green stage 7.360
SRR8316901Third green stage 7.536
SRR8316898Complete white stage 5.577
SRR8316899Complete white stage 7.381
SRR8316903Complete white stage 9.813
SRR8316902Silver flowering stage4.172
SRR8316904Silver flowering stage6.087
SRR8316905Silver flowering stage2.973
SRR8316906Gold flowering stage 10.538
SRR8316907Gold flowering stage 9.140
SRR8316908Gold flowering stage 10.176
SRP132670SRR6706286Control8.427
SRR6706287Light intensity 50%7.670
SRR6706288Light intensity 20%7.714
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.237
CNS0095593Slightly white alabastrum(diploid) 23.799
CNS0095594Slightly white alabastrum(diploid) 34.262
CNS0095595Whole white alabastrum(diploid) 25.985
CNS0095596Whole white alabastrum(diploid) 34.417
CNS0095597Whole white alabastrum(diploid) 44.862
CNS0095598Silvery flower (diploied) 15.752
CNS0095599Silvery flower (diploied) 24.424
CNS0095600Silvery flower (diploied) 37.717
CNS0095601Golden flower (diploid) 13.045
CNS0095602Golden flower (diploid) 26.260
CNS0095603Golden flower (diploid) 35.944
CNS0095604Slightly white alabastrum(tetraploid) 15.231
CNS0095605Slightly white alabastrum(tetraploid) 24.042
CNS0095606Slightly white alabastrum(tetraploid) 37.606
CNS0095607Whole white alabastrum(tetraploid) 13.571
CNS0095608Whole white alabastrum(tetraploid) 24.952
CNS0095609Whole white alabastrum(tetraploid) 35.880
CNS0095610Silvery flower (tetraploid) 18.525
CNS0095611Silvery flower (tetraploid) 25.895
CNS0095612Silvery flower (tetraploid) 39.914
CNS0095613Golden flower (tetraploid) 13.828
CNS0095614Golden flower (tetraploid) 27.617
CNS0095615Golden flower (tetraploid) 37.845
CRA001975CRR073297Stem 15.970
CRR073298Stem 27.066
CRR073299Stem 34.270
CRR073300Leaf 18.070
CRR073301Leaf 26.940
CRR073302Leaf 35.392
CRR073303Juvenile bud 16.318
CRR073304Juvenile bud 24.675
CRR073305Juvenile bud 34.751
CRR073306Third green 17.379
CRR073307Third green 27.034
CRR073308Third green 34.424
CRR073309Second white 18.863
CRR073310Second white 28.998
CRR073311Second white 39.646
CRR073312Silver flowering 15.628
CRR073313Silver flowering 25.681
CRR073314Silver flowering 37.702
CRR073315Gold flowering 12.639
CRR073316Gold flowering 25.029
CRR073317Gold flowering 33.468
CRR073318Tawny withering 18.491
CRR073319Tawny withering 23.584
CRR073320Tawny withering 36.039