Gene detail

Detail information of GWHGAAZE019216

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17228.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SGH2\|MBD9_ARATH	0.0000006	Methyl-CpG-binding domain-containing protein 9
trEMBL	tr\|A0A068VC44\|A0A068VC44_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313\|EMBL:CDP17228.1}
TAIR10	AT3G05670.1	7E-99	RING/U-box protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	34227476	34230793	-
GWHAAZE00000005	mRNA	34227476	34230793	-
GWHAAZE00000005	exon	34227476	34227723	-
GWHAAZE00000005	exon	34228288	34229218	-
GWHAAZE00000005	exon	34229687	34230793	-
GWHAAZE00000005	CDS	34229687	34230793	-
GWHAAZE00000005	CDS	34228288	34229218	-
GWHAAZE00000005	CDS	34227476	34227723	-

Transcript Sequence
>GWHTAAZE019238 ATGGGGAGGAGAAGCAAGTTTCGATTCAAGCGTAGTACATGGAGAAGGGTTCGGTCAAAAGAGAAGGGTTCAGATGAATCAGACGAGGATTATAATGTAGGGAGGGATGAGTTACTTGATGAGTCTGATGAGTATTGTTCTTTGGATGGAGATGAATCTGAAGATTGTTTAGGTAAATTTGAAGAAGAGGATGAAGTAAAGGTGAAGAAGGTTGCTACATCAAAAGCTAAAAGGAGTTTACCAAATAGGAGGGCCAATGGAATTAAGAAGCCACGGAAGAAGAAGAGGATCGTATATAAACAAGAATATGATGAGGATGATGAGGATGATGATGATGATGAGGAATTTACACTTGATGAAATTAATGGTGTAGATGATGAACATGAAATGACAGAGATTAAGAAGAATAAGAAGGTTGCCAATACTCTTTTGCGGGAAAACGGTGTTGCTAGAGGGTGGAAAGGGAAGAGGAAGAGGAAAAGGAATTCTAATCTTGTGAAAAAGTCTATGGGGAAAAAATCGAGGAAAAGAAGGATTGTGAGAAAAACAAGGTCTGGTAATGTTGGGGGGTTCAAAGACAAGAAAGTAGTGGTGGAAGAGAAGAGTAAGAAGAATTCTGGCAAGAGGAAGAGGAGATTTATCGGCGATTCCGACTCGGATTTTGTGAGTTCAGGATTATCTGACTATGAGTACACTATCTCCGAGGAAGAGAGAGAGCAGGTGAGAGAGGCGAGTAAATTTTGCACGAGTTTGGCCATTGGTTTGAGGAGTTCATCTTCTTCAAAGAAAGTACAACAAGAAGAACCAACAAGTCATAAAAGGAAACATCAGGGAAGAAAGGGTAAAGAGAAGGTAGAGGATTTGAATATTGAAGTTGGAAATCAGGTTTGTGGAATTTGTTTATCAGAAGAAGGAAAGAAAACAGTTCGAGGAAAACTAAATTGTTGTAGTCATTATTTTTGTTTTCCTTGTATCATGGAGTGGTCGAAGGTGGAATCTCGGTGCCCTCTGTGTAAACAAAGATTTGTGACAATTAGTAAAACTGCGAGACTGAACACAGGATTTGAATTAAGGACTGTGGCAATACGGGTCCCTGAGCGCAATCAGGTTTATCGACCATCTGAGGAAGAGATTAGTGGTTATGTTGACCCTTACGGAAGTGTTATATGTAATGAATGCCATCAAGGTGGGGATGATGCCCTCATGTTGCTGTGTGATCTATGTGATTCACCTGCGCACACTTATTGTGTGGGCCTCGGACATGAAGTACCAGAAGGTAATTGGTTTTGTGAAGCCTGTCGACCAGCCGCCTTTAGTTCCGGAAACTCACAAGGTCCAAATTCTACTCAAAATCAAGTTACAACTAACAATTTGTGTGGCGTGGCATCGCCTGTTCACAATCTTGGGGAAGGTGTAGATTTTAATTCTCTGTTTGTACCCGATTCGCCATTGACACAAGAAACTGGGGCTGGTTCCTCTACGAGACACGCGGATCGAGATTTTCGCCCCGCTTCTCCAACATCACCGGCGTTTACTGTACTAGATAGACGCAGGATATATAGCCAGATACGGGATATTATTAATAACAGATCGAGTCATTTGGGTAGTAGGTCTAATGGGATATCGGCTACTAATTCAAGACTTGGATCATTAGGATCTCAACTTGATCCGGGTAGGGAAATAGCCCCTCAAACTTCAACACTACCAGAAAGGGTATCACCCCAATGTACATTTTCGGAGAATAGGTTACAGGATAATAGCCCACCTTTAGTTCGCAACAGGGATCGTTTTTCTTCAGGACCAAGTGATTTTAGTTCGCAATATGGAATATTACAAGCTCCAAATGCAGTGATGGATGTGGGGTCCACTTCAAGTTATGTGCTGCGCCATCCATGCAGTCGCAGATTAAATATTGGATCTGATGCGAGTGCGTCTTCTCGTGTGTGTATAGAGGCAAGCCAGCTCAATGGAGAGAAAGAACAAGTGCAACAAATGGTTCGAAAGCATTTGAAAGCATTATCCAGGGGTAACGAATTAGGCTACAACACCTTCAAGGATGTAGCGAGGAGCTCGACACACACCGTCTTAGCTGCCTGTGGACTTGAGCACAGGGCGAATGAGGTTTATCCTGTGCAACCACCCTCACTATGTAACCATGTGGAACAACTGGCTGGTGCAAGAGCAAGTTTAATGAGAGATTTTTGCTCAGATTGTTTCAATTCGTTTGTGGGGTACGTAGTAGAAACGATCGTGAGCGCAAGAATCTCTCCCATGGTTAGGGATTAG

Network for GWHGAAZE019216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	296	339	3.30E-07
PF00628.30	PHD	389	435	6.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.250
	SRR3591706	second leaf	7.283
	SRR3591707	mature leaf	6.281
	SRR3591708	Shoot apex	7.188
	SRR3591709	Stem	14.339
	SRR3591710	White floral bud	20.591
	SRR3591711	White flower	27.408
	SRR3591712	Green floral bud	17.307
	SRR3591713	Yellow flower	27.677
SRP173429	SRR8316895	Juvenile bud stage	5.498
	SRR8316896	Juvenile bud stage	8.161
	SRR8316897	Juvenile bud stage	2.482
	SRR8316894	Third green stage	3.252
	SRR8316900	Third green stage	10.024
	SRR8316901	Third green stage	8.542
	SRR8316898	Complete white stage	4.772
	SRR8316899	Complete white stage	9.673
	SRR8316903	Complete white stage	13.948
	SRR8316902	Silver flowering stage	9.119
	SRR8316904	Silver flowering stage	13.079
	SRR8316905	Silver flowering stage	6.688
	SRR8316906	Gold flowering stage	24.340
	SRR8316907	Gold flowering stage	23.248
	SRR8316908	Gold flowering stage	18.968
SRP132670	SRR6706286	Control	9.214
	SRR6706287	Light intensity 50%	8.989
	SRR6706288	Light intensity 20%	7.942
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.449
	CNS0095593	Slightly white alabastrum(diploid) 2	7.678
	CNS0095594	Slightly white alabastrum(diploid) 3	6.614
	CNS0095595	Whole white alabastrum(diploid) 2	8.499
	CNS0095596	Whole white alabastrum(diploid) 3	7.043
	CNS0095597	Whole white alabastrum(diploid) 4	8.407
	CNS0095598	Silvery flower (diploied) 1	9.083
	CNS0095599	Silvery flower (diploied) 2	8.694
	CNS0095600	Silvery flower (diploied) 3	21.167
	CNS0095601	Golden flower (diploid) 1	8.136
	CNS0095602	Golden flower (diploid) 2	25.680
	CNS0095603	Golden flower (diploid) 3	24.290
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.334
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.792
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.681
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.753
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.393
	CNS0095610	Silvery flower (tetraploid) 1	18.753
	CNS0095611	Silvery flower (tetraploid) 2	15.966
	CNS0095612	Silvery flower (tetraploid) 3	15.602
	CNS0095613	Golden flower (tetraploid) 1	19.300
	CNS0095614	Golden flower (tetraploid) 2	24.828
	CNS0095615	Golden flower (tetraploid) 3	31.248
CRA001975	CRR073297	Stem 1	11.831
	CRR073298	Stem 2	13.263
	CRR073299	Stem 3	10.234
	CRR073300	Leaf 1	11.153
	CRR073301	Leaf 2	11.164
	CRR073302	Leaf 3	6.806
	CRR073303	Juvenile bud 1	8.378
	CRR073304	Juvenile bud 2	8.984
	CRR073305	Juvenile bud 3	8.726
	CRR073306	Third green 1	7.048
	CRR073307	Third green 2	4.753
	CRR073308	Third green 3	7.789
	CRR073309	Second white 1	4.816
	CRR073310	Second white 2	9.168
	CRR073311	Second white 3	10.707
	CRR073312	Silver flowering 1	11.246
	CRR073313	Silver flowering 2	10.620
	CRR073314	Silver flowering 3	11.024
	CRR073315	Gold flowering 1	4.362
	CRR073316	Gold flowering 2	6.944
	CRR073317	Gold flowering 3	1.969
	CRR073318	Tawny withering 1	9.759
	CRR073319	Tawny withering 2	10.619
	CRR073320	Tawny withering 3	8.314