Gene detail

Detail information of GWHGAAZE019217

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010659321.1	0	PREDICTED: sister chromatid cohesion 1 protein 3 [Vitis vinifera]
Swissprot	tr\|Q9FQ19\|SCC13_ARATH	6E-121	Sister chromatid cohesion 1 protein 3
trEMBL	tr\|A0A068UJE9\|A0A068UJE9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_27 {ECO:0000313\|EMBL:CDP07718.1}
TAIR10	AT3G59550.1	6E-81	Rad21/Rec8-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	34242562	34251113	+
GWHAAZE00000005	mRNA	34242562	34251113	+
GWHAAZE00000005	exon	34242562	34242648	+
GWHAAZE00000005	exon	34244420	34244556	+
GWHAAZE00000005	exon	34246199	34246463	+
GWHAAZE00000005	exon	34246543	34246589	+
GWHAAZE00000005	exon	34246700	34246749	+
GWHAAZE00000005	exon	34247109	34247176	+
GWHAAZE00000005	exon	34247259	34247629	+
GWHAAZE00000005	exon	34248388	34248499	+
GWHAAZE00000005	exon	34248589	34248725	+
GWHAAZE00000005	exon	34249260	34249705	+
GWHAAZE00000005	exon	34250322	34250358	+
GWHAAZE00000005	exon	34250558	34250642	+
GWHAAZE00000005	exon	34250752	34250887	+
GWHAAZE00000005	exon	34251009	34251113	+
GWHAAZE00000005	five_prime_UTR	34242562	34242648	+
GWHAAZE00000005	five_prime_UTR	34244420	34244432	+
GWHAAZE00000005	CDS	34244433	34244556	+
GWHAAZE00000005	CDS	34246199	34246463	+
GWHAAZE00000005	CDS	34246543	34246589	+
GWHAAZE00000005	CDS	34246700	34246749	+
GWHAAZE00000005	CDS	34247109	34247176	+
GWHAAZE00000005	CDS	34247259	34247629	+
GWHAAZE00000005	CDS	34248388	34248499	+
GWHAAZE00000005	CDS	34248589	34248725	+
GWHAAZE00000005	CDS	34249260	34249705	+
GWHAAZE00000005	CDS	34250322	34250358	+
GWHAAZE00000005	CDS	34250558	34250642	+
GWHAAZE00000005	CDS	34250752	34250887	+
GWHAAZE00000005	CDS	34251009	34251113	+

Transcript Sequence
>GWHTAAZE019239 AGTGAGATTGGTGTATTGTCCAATACCTTTGCAGAGAGACGAACTCATAAGAGGAAGTCATACACTTTGATGCAACTATGTTGTGAGGAGGGAGATAAAGATGTTCTACTCACACACAATATTGGCGAAAAAAGGGCCATTGGGAACCGTTTGGTGCGCTGCTCATCTACAGCACAAACTCAAAAAGTCTCATTACACTTCCACTGATATCTCCTCCACTGTTGAGCGCATAATGTATCCGGATGTCCCCATTGCTTTGAGAATGTCAGGCCATCTTTTGCTTGGTGTTGTTCAGATATACTCGAAGAAAGTTGATTATCTATACAAAGATTGCAATGTTGTACTGATAGGGTTAGGAAAGGCATTTTCTACTGCAGAAGTTAATGTACCAGCAGATGCAACACATGCACCATTTCACTCTGTCACTTTGCCAGGGACTTTTGACCTTGATGCGTTGGATTTGGATGATGATGACCTTTGTCAAGATGGGTTTCATGATAATCATCTTAGAAGCCAAGAAGAGATAACACTAAGAGATCAAATTCCGTTTGGAAGAGACCCATATGTTATCATCACCTTCGACAAGGATGTTCTGAAGGATTTATCACATGAGGAAGATGCTTCAGGATCAGGGGCCAGGCCAATGGAGGAAGATTCCAATCCATCAATTCCAGTACGTATAAGTACCGGTTTTCAAGATCCCGGTCCTAGTAACCAGACAGGAACAGTCGATGAAAGGCCTAACGAAGATGGTATTCCTCAAAATATTCCAGAAGTTGAAGTTATGCGCGATGCTGTTCATGATTTATCATTGGGAAATGTTCCAAGTTGGCCTGACCAAGGGGATGACAGACTTGAACCAGATAGAGATTTGGAGCAGCTGATTTTTAAGGAAATGCCAACTCCTGCCGTTGAAGAAATTTCTGTTCCTGGAGGCCATTCTATCCAGTCCCAGCAAAACCAAGAACTGCCTCCTAGTGCGTCAGACCAAGGCCATGGCATTTTTGATTCGCACAATTCATTTCGGGATGGATCGCCTGATTATGTAATTTGTCCAACTCCTCCTGTTGAGCAGCCAAAAGCTAGACCAAGAAAGAGAAAGCAGTTATTTGACGAAGCAACAGTATTGACTAACAAGTTTGTGAAAGAGGCATTAGACGATACTAGCAATATACTGCGAGCAAAGAGGAACTGCCCTTGCTCTGCTTTGGGTGTTTGGAAATTGAGCAATAGATTAAAGAAGGATAAAGTCTTCTTTGATCCCATAATTACTGGGCTGTCTGCTGATCTTTGTAATATATTCACTGAAGATTCTATTTCTTCGAAACCTCAATTAGTTTCTACAGGGGCAGCTCAACGGGAACCGAGTGTAGCACCAACTTCTGATCCCACAAATGACGTTGACATGGAATATGAACATATTCGTAACTATGAAGGCCCTTCTACGAGCAATATTTTGCCTGATATTGTGCCTTCTTCAGATAGATTCCCGTCTTCTCCAAATGCCTTTTTGCCTCATCCTAGTGGAGGAGATGACTTCACTCCTGCCTATGGAACCACTTCAGAACACGTGCCAACAACTACTGGAACCAGGGTCACACCAACACCCGACCCTGGCGCATCTACTGGACCTCTCGGGTCCGATATGGAAACCCCAGTGAATTTCTTTGACAACACGGGCCTTTCCGATATTCCTGAGATGGCTGATTCTGCAGTAGGGGAGCTAAGTTTTCTAGAAGACGATAATACACCGGCTGGATCACAAGGAACCCCAGAAGTTGACTACTCTTTAAGAAAAGAAAATGGAATGCCCGAAATCAACACCTTATCTGTGAGAACAAGGGCCGTGGCTCAATTCCTAATAGCAAAGTCGTCATGTGCCCCAATATCAGATGACCAATCAGGAGAACTTAGTTTGAACAACATCTTAGAAGGGAAAAGAAGAAAAGTATCTGCTCGAATGTTTTATGAGACACTGGTTTTGAAGAGTTATGGACTTGTAGATTTGGAGCAAAAAGAACCTTATGGTGATATTATCTTGAAGGTTATGCCTAAGCTTTCCAAGGAACAGTTTTCAAGTTAA

Network for GWHGAAZE019217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04825.14	Rad21_Rec8_N	1	100	1.30E-34
PF04824.17	Rad21_Rec8	602	653	5.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06670	SCC1, MCD1, RAD21	Cell cycle	map04110
K06670	SCC1, MCD1, RAD21	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.162
	SRR3591706	second leaf	2.662
	SRR3591707	mature leaf	2.683
	SRR3591708	Shoot apex	12.213
	SRR3591709	Stem	4.477
	SRR3591710	White floral bud	2.967
	SRR3591711	White flower	2.776
	SRR3591712	Green floral bud	4.393
	SRR3591713	Yellow flower	1.741
SRP173429	SRR8316895	Juvenile bud stage	7.688
	SRR8316896	Juvenile bud stage	8.468
	SRR8316897	Juvenile bud stage	5.574
	SRR8316894	Third green stage	2.898
	SRR8316900	Third green stage	5.524
	SRR8316901	Third green stage	5.011
	SRR8316898	Complete white stage	0.741
	SRR8316899	Complete white stage	5.933
	SRR8316903	Complete white stage	1.965
	SRR8316902	Silver flowering stage	1.426
	SRR8316904	Silver flowering stage	2.198
	SRR8316905	Silver flowering stage	0.732
	SRR8316906	Gold flowering stage	2.230
	SRR8316907	Gold flowering stage	1.787
	SRR8316908	Gold flowering stage	2.236
SRP132670	SRR6706286	Control	3.996
	SRR6706287	Light intensity 50%	4.104
	SRR6706288	Light intensity 20%	4.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.171
	CNS0095593	Slightly white alabastrum(diploid) 2	4.245
	CNS0095594	Slightly white alabastrum(diploid) 3	3.633
	CNS0095595	Whole white alabastrum(diploid) 2	3.580
	CNS0095596	Whole white alabastrum(diploid) 3	2.870
	CNS0095597	Whole white alabastrum(diploid) 4	2.867
	CNS0095598	Silvery flower (diploied) 1	5.565
	CNS0095599	Silvery flower (diploied) 2	3.263
	CNS0095600	Silvery flower (diploied) 3	1.522
	CNS0095601	Golden flower (diploid) 1	3.815
	CNS0095602	Golden flower (diploid) 2	2.010
	CNS0095603	Golden flower (diploid) 3	2.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.631
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.484
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.549
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.171
	CNS0095610	Silvery flower (tetraploid) 1	2.633
	CNS0095611	Silvery flower (tetraploid) 2	2.018
	CNS0095612	Silvery flower (tetraploid) 3	2.380
	CNS0095613	Golden flower (tetraploid) 1	2.635
	CNS0095614	Golden flower (tetraploid) 2	1.061
	CNS0095615	Golden flower (tetraploid) 3	2.071
CRA001975	CRR073297	Stem 1	9.607
	CRR073298	Stem 2	6.377
	CRR073299	Stem 3	2.590
	CRR073300	Leaf 1	5.186
	CRR073301	Leaf 2	5.157
	CRR073302	Leaf 3	1.570
	CRR073303	Juvenile bud 1	1.587
	CRR073304	Juvenile bud 2	0.521
	CRR073305	Juvenile bud 3	1.991
	CRR073306	Third green 1	0.295
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.056
	CRR073309	Second white 1	0.009
	CRR073310	Second white 2	0.189
	CRR073311	Second white 3	0.134
	CRR073312	Silver flowering 1	0.179
	CRR073313	Silver flowering 2	0.112
	CRR073314	Silver flowering 3	0.067
	CRR073315	Gold flowering 1	0.581
	CRR073316	Gold flowering 2	1.422
	CRR073317	Gold flowering 3	0.207
	CRR073318	Tawny withering 1	1.923
	CRR073319	Tawny withering 2	3.375
	CRR073320	Tawny withering 3	2.744