Detail information of GWHGAAZE019225


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283093.10PREDICTED: eukaryotic translation initiation factor 3 subunit A [Vitis vinifera]
Swissprottr|Q9LD55|EIF3A_ARATH0Eukaryotic translation initiation factor 3 subunit A {ECO:0000255|HAMAP-Rule:MF_03000}
trEMBLtr|F6I4Q7|F6I4Q7_VITVI0Eukaryotic translation initiation factor 3 subunit A {ECO:0000256|HAMAP-Rule:MF_03000, ECO:0000256|SAAS:SAAS00003684}
TAIR10AT4G11420.10eukaryotic translation initiation factor 3A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3437873934389109-
GWHAAZE00000005mRNA3437873934389109-
GWHAAZE00000005exon3437873934379175-
GWHAAZE00000005exon3437991034380105-
GWHAAZE00000005exon3438055834380638-
GWHAAZE00000005exon3438147234381678-
GWHAAZE00000005exon3438203534382241-
GWHAAZE00000005exon3438239934382647-
GWHAAZE00000005exon3438282434383048-
GWHAAZE00000005exon3438360034383827-
GWHAAZE00000005exon3438491134384940-
GWHAAZE00000005exon3438502534385393-
GWHAAZE00000005exon3438556834385819-
GWHAAZE00000005exon3438665234387133-
GWHAAZE00000005exon3438906434389109-
GWHAAZE00000005CDS3438906434389109-
GWHAAZE00000005CDS3438665234387133-
GWHAAZE00000005CDS3438556834385819-
GWHAAZE00000005CDS3438502534385393-
GWHAAZE00000005CDS3438491134384940-
GWHAAZE00000005CDS3438360034383827-
GWHAAZE00000005CDS3438282434383048-
GWHAAZE00000005CDS3438239934382647-
GWHAAZE00000005CDS3438203534382241-
GWHAAZE00000005CDS3438147234381678-
GWHAAZE00000005CDS3438055834380638-
GWHAAZE00000005CDS3437991034380105-
GWHAAZE00000005CDS3437873934379175-
Transcript Sequence

Network for GWHGAAZE019225

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01399.28PCI3835404.70E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03254EIF3A RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf104.539
SRR3591706second leaf63.612
SRR3591707mature leaf43.879
SRR3591708Shoot apex111.040
SRR3591709Stem70.236
SRR3591710White floral bud73.655
SRR3591711White flower81.733
SRR3591712Green floral bud95.379
SRR3591713Yellow flower56.859
SRP173429 SRR8316895Juvenile bud stage 57.857
SRR8316896Juvenile bud stage 82.822
SRR8316897Juvenile bud stage 44.666
SRR8316894Third green stage 36.567
SRR8316900Third green stage 96.542
SRR8316901Third green stage 93.648
SRR8316898Complete white stage 22.178
SRR8316899Complete white stage 84.598
SRR8316903Complete white stage 50.691
SRR8316902Silver flowering stage27.247
SRR8316904Silver flowering stage39.145
SRR8316905Silver flowering stage17.502
SRR8316906Gold flowering stage 48.607
SRR8316907Gold flowering stage 52.525
SRR8316908Gold flowering stage 63.591
SRP132670SRR6706286Control71.777
SRR6706287Light intensity 50%78.777
SRR6706288Light intensity 20%81.014
CNP0000432CNS0095592Slightly white alabastrum(diploid) 167.443
CNS0095593Slightly white alabastrum(diploid) 275.434
CNS0095594Slightly white alabastrum(diploid) 366.564
CNS0095595Whole white alabastrum(diploid) 256.858
CNS0095596Whole white alabastrum(diploid) 353.145
CNS0095597Whole white alabastrum(diploid) 451.454
CNS0095598Silvery flower (diploied) 167.877
CNS0095599Silvery flower (diploied) 260.994
CNS0095600Silvery flower (diploied) 363.216
CNS0095601Golden flower (diploid) 159.925
CNS0095602Golden flower (diploid) 258.382
CNS0095603Golden flower (diploid) 357.191
CNS0095604Slightly white alabastrum(tetraploid) 177.399
CNS0095605Slightly white alabastrum(tetraploid) 268.901
CNS0095606Slightly white alabastrum(tetraploid) 3129.619
CNS0095607Whole white alabastrum(tetraploid) 147.114
CNS0095608Whole white alabastrum(tetraploid) 239.364
CNS0095609Whole white alabastrum(tetraploid) 397.976
CNS0095610Silvery flower (tetraploid) 187.683
CNS0095611Silvery flower (tetraploid) 272.510
CNS0095612Silvery flower (tetraploid) 375.265
CNS0095613Golden flower (tetraploid) 146.330
CNS0095614Golden flower (tetraploid) 269.711
CNS0095615Golden flower (tetraploid) 347.898
CRA001975CRR073297Stem 1111.609
CRR073298Stem 2103.658
CRR073299Stem 393.736
CRR073300Leaf 1121.979
CRR073301Leaf 2112.363
CRR073302Leaf 385.634
CRR073303Juvenile bud 192.092
CRR073304Juvenile bud 261.038
CRR073305Juvenile bud 3115.278
CRR073306Third green 129.981
CRR073307Third green 226.128
CRR073308Third green 335.014
CRR073309Second white 125.533
CRR073310Second white 231.518
CRR073311Second white 331.192
CRR073312Silver flowering 131.213
CRR073313Silver flowering 239.150
CRR073314Silver flowering 335.105
CRR073315Gold flowering 124.728
CRR073316Gold flowering 242.529
CRR073317Gold flowering 321.830
CRR073318Tawny withering 179.669
CRR073319Tawny withering 267.371
CRR073320Tawny withering 381.844