Detail information of GWHGAAZE019236


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN65690.16.18258E-83hypothetical protein VITISV_022466 [Vitis vinifera]
Swissprottr|O80494|P2B15_ARATH8E-42F-box protein PP2-B15
trEMBLtr|A5BIA6|A5BIA6_VITVI2E-83Putative uncharacterized protein {ECO:0000313|EMBL:CAN65690.1}
TAIR10AT2G02240.12E-27F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3474217434746239+
GWHAAZE00000005mRNA3474217434746239+
GWHAAZE00000005exon3474217434742428+
GWHAAZE00000005exon3474583234746239+
GWHAAZE00000005CDS3474217434742428+
GWHAAZE00000005CDS3474583234746239+
Transcript Sequence

Network for GWHGAAZE019236

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0004


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box1469.50E-05
PF14299.7PP2852183.30E-29
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.442
SRR3591706second leaf4.534
SRR3591707mature leaf21.949
SRR3591708Shoot apex5.461
SRR3591709Stem11.053
SRR3591710White floral bud7.739
SRR3591711White flower14.149
SRR3591712Green floral bud2.188
SRR3591713Yellow flower28.525
SRP173429 SRR8316895Juvenile bud stage 1.942
SRR8316896Juvenile bud stage 3.608
SRR8316897Juvenile bud stage 0.472
SRR8316894Third green stage 1.106
SRR8316900Third green stage 3.304
SRR8316901Third green stage 1.874
SRR8316898Complete white stage 2.721
SRR8316899Complete white stage 3.029
SRR8316903Complete white stage 3.961
SRR8316902Silver flowering stage2.144
SRR8316904Silver flowering stage2.314
SRR8316905Silver flowering stage1.636
SRR8316906Gold flowering stage 6.220
SRR8316907Gold flowering stage 9.641
SRR8316908Gold flowering stage 1.927
SRP132670SRR6706286Control97.655
SRR6706287Light intensity 50%24.489
SRR6706288Light intensity 20%8.433
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.582
CNS0095593Slightly white alabastrum(diploid) 21.866
CNS0095594Slightly white alabastrum(diploid) 32.748
CNS0095595Whole white alabastrum(diploid) 21.532
CNS0095596Whole white alabastrum(diploid) 31.033
CNS0095597Whole white alabastrum(diploid) 42.145
CNS0095598Silvery flower (diploied) 16.636
CNS0095599Silvery flower (diploied) 29.103
CNS0095600Silvery flower (diploied) 36.910
CNS0095601Golden flower (diploid) 19.799
CNS0095602Golden flower (diploid) 27.919
CNS0095603Golden flower (diploid) 38.892
CNS0095604Slightly white alabastrum(tetraploid) 11.790
CNS0095605Slightly white alabastrum(tetraploid) 21.780
CNS0095606Slightly white alabastrum(tetraploid) 33.025
CNS0095607Whole white alabastrum(tetraploid) 11.065
CNS0095608Whole white alabastrum(tetraploid) 22.577
CNS0095609Whole white alabastrum(tetraploid) 32.071
CNS0095610Silvery flower (tetraploid) 14.532
CNS0095611Silvery flower (tetraploid) 25.327
CNS0095612Silvery flower (tetraploid) 32.146
CNS0095613Golden flower (tetraploid) 19.054
CNS0095614Golden flower (tetraploid) 211.307
CNS0095615Golden flower (tetraploid) 33.731
CRA001975CRR073297Stem 12.081
CRR073298Stem 23.244
CRR073299Stem 33.155
CRR073300Leaf 11.361
CRR073301Leaf 21.401
CRR073302Leaf 30.443
CRR073303Juvenile bud 10.602
CRR073304Juvenile bud 21.105
CRR073305Juvenile bud 32.253
CRR073306Third green 12.297
CRR073307Third green 22.408
CRR073308Third green 31.974
CRR073309Second white 12.713
CRR073310Second white 22.070
CRR073311Second white 32.154
CRR073312Silver flowering 12.782
CRR073313Silver flowering 21.541
CRR073314Silver flowering 31.347
CRR073315Gold flowering 161.488
CRR073316Gold flowering 255.765
CRR073317Gold flowering 337.970
CRR073318Tawny withering 13.276
CRR073319Tawny withering 26.176
CRR073320Tawny withering 34.397