Gene detail

Detail information of GWHGAAZE019249

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006433467.1	hypothetical protein CICLE_v10000816mg [Citrus clementina]
Swissprot	tr\|Q9M9W7\|PME22_ARATH	Pectinesterase 22 (Precursor)
trEMBL	tr\|V4T0U0\|V4T0U0_9ROSI	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G05620.1	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	35231029	35234239	+
GWHAAZE00000005	mRNA	35231029	35234239	+
GWHAAZE00000005	exon	35231029	35231541	+
GWHAAZE00000005	exon	35231979	35232390	+
GWHAAZE00000005	exon	35233569	35234239	+
GWHAAZE00000005	CDS	35231029	35231541	+
GWHAAZE00000005	CDS	35231979	35232390	+
GWHAAZE00000005	CDS	35233569	35234239	+

Transcript Sequence
>GWHTAAZE019271 ATGGCATTGCCCAAAATTTTCCTCCTCTTCATCCTTTTACAATCCCTCGAAGTTCTTTCAAATGAAACCATCACAAAACACCAAACCAAAGCCATGCTCATTCAAGCATGCCAAAACATCCAAGATCAATCCACTTGCCTCTCAAATCTCCAATCCCGGGTCAACCGGTCAGGACGGGATCCTAACTCGGTCCTAACCGCCGCGCTTGAGGCCACGCTAGACAAGGCGAGGCTGGCCATTGAAGCGGTCACCAAGTTCAATTCTTTATCGATAACTTCGAGAGAGCAAATCGCGATCGAGGATTGCAAGGAGTTGCTCGACTTCTCTGTATCTGAGCTTGCCTGGTCTGTGGCTGAGATGAACGAGATTCGAGCTGGCTCAAAAAACGTGCACTACGAAGGAAACCTCAAGGCTTGGCTTAGTGCTGCGTTGAGTAACCAAGACACGTGCCTTGAAGGGTTCGAGGGGACTGACCGTCGGCTCGAGAACTTCATTAATGGAAGTCTCACACAGGTCTCACAGCTCATAGCTAATGTTCTAACAATGTACACCGAGCTACATAGCATGCCCTTCAAGCCACCAAGACACGGCGCCGTTTACAACGTATCCATGGACTTCCCAAAATGGATAACAGATGGTGATAAGGAGATTCTTCTTTCCGAGAACGGAGTGCATGTGGACGTGGTGGTGGCATTGGATGGGAGCGGGCACTACCGTTCAATCACACAAGCGATTAACGAGGCCCCGAATTACAGTAATAGGAGATACATTATATACGTGAAGAAAGGAGTTTATAATGAGAATATTGATATGAAGAAGAAGAAAACTAATATTATGCTTGTTGGTGATGGAATTGGAGCTACTATTGTGAGTGGTAATAGGAATTTCATGCAAGGGTGGACTACTTTTAGAACAGCTACTGTTGCTGTTTCTGGGAAAGGATTCGTAGCAAGAGATATGACATTCCGAAACACGGCCGGTCCCCGTAACCACCAAGCCGTTGCCCTTCGAGTAGACTCTGATCAATCGGCCTTTTACCGATGCAGCATGGAAGGCTACCAAGACACTCTCTACGCCCACTCCCTCCGCCAATTCTATCGCGAATGTAACATTCATGGCACCATCGACTTCATATTCGGTAATGGTGCAGCCGTACTCCAAAATTGCAAGATATTCACTAGGGAACCCCTACCACTGCAAAAAGTCACCATCACGGCCCAAGGTCGAAAAGACCCTAACCAAGGAACAGGATTTTCAATAGTGGACAGTTATGTTTATGCCACCAAGCCCACTTACTTGGGGCGGCCCTGGAAAGAATATTCCAGGACCGTGTTCATGAACACATACATGAGCGGACAAGTCCAACCCAGAGGCTGGCTTGAGTGGTATGGAAACTTTGCTTTGACAAGTTTGTGGTATGGTGAGTATAGAAACTATGGACCCGGCTCATCACCATCGAGTCGGGTTCGATGGCCGGGTTTTCATATAATCACAAATAAGGCCCAGGCTAGTTTTTTTACCGTGGGACGATTCATTGATGGGTCAGCGTGGTTGCCATCAACTGGCGTGAAGTTCTCTTCCGGTTTAATAAATTAA

Network for GWHGAAZE019249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	35	182	1.20E-23
PF01095.20	Pectinesterase	227	514	7.30E-140

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.003
	SRR3591706	second leaf	3.447
	SRR3591707	mature leaf	0.273
	SRR3591708	Shoot apex	2.789
	SRR3591709	Stem	8.097
	SRR3591710	White floral bud	3.587
	SRR3591711	White flower	1.960
	SRR3591712	Green floral bud	6.724
	SRR3591713	Yellow flower	0.286
SRP173429	SRR8316895	Juvenile bud stage	3.334
	SRR8316896	Juvenile bud stage	2.657
	SRR8316897	Juvenile bud stage	2.061
	SRR8316894	Third green stage	2.112
	SRR8316900	Third green stage	6.958
	SRR8316901	Third green stage	7.386
	SRR8316898	Complete white stage	0.437
	SRR8316899	Complete white stage	2.187
	SRR8316903	Complete white stage	0.665
	SRR8316902	Silver flowering stage	0.212
	SRR8316904	Silver flowering stage	0.052
	SRR8316905	Silver flowering stage	0.085
	SRR8316906	Gold flowering stage	0.048
	SRR8316907	Gold flowering stage	0.051
	SRR8316908	Gold flowering stage	0.158
SRP132670	SRR6706286	Control	3.593
	SRR6706287	Light intensity 50%	3.588
	SRR6706288	Light intensity 20%	2.641
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.210
	CNS0095593	Slightly white alabastrum(diploid) 2	10.455
	CNS0095594	Slightly white alabastrum(diploid) 3	6.371
	CNS0095595	Whole white alabastrum(diploid) 2	4.090
	CNS0095596	Whole white alabastrum(diploid) 3	4.222
	CNS0095597	Whole white alabastrum(diploid) 4	2.225
	CNS0095598	Silvery flower (diploied) 1	0.577
	CNS0095599	Silvery flower (diploied) 2	0.120
	CNS0095600	Silvery flower (diploied) 3	0.094
	CNS0095601	Golden flower (diploid) 1	0.522
	CNS0095602	Golden flower (diploid) 2	0.251
	CNS0095603	Golden flower (diploid) 3	0.157
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.450
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.113
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.565
	CNS0095610	Silvery flower (tetraploid) 1	0.239
	CNS0095611	Silvery flower (tetraploid) 2	0.370
	CNS0095612	Silvery flower (tetraploid) 3	0.602
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	0.256
	CNS0095615	Golden flower (tetraploid) 3	0.802
CRA001975	CRR073297	Stem 1	2.707
	CRR073298	Stem 2	3.533
	CRR073299	Stem 3	3.042
	CRR073300	Leaf 1	4.396
	CRR073301	Leaf 2	7.764
	CRR073302	Leaf 3	7.264
	CRR073303	Juvenile bud 1	2.220
	CRR073304	Juvenile bud 2	0.890
	CRR073305	Juvenile bud 3	2.891
	CRR073306	Third green 1	0.400
	CRR073307	Third green 2	1.161
	CRR073308	Third green 3	0.387
	CRR073309	Second white 1	0.099
	CRR073310	Second white 2	0.181
	CRR073311	Second white 3	0.049
	CRR073312	Silver flowering 1	0.110
	CRR073313	Silver flowering 2	0.013
	CRR073314	Silver flowering 3	0.095
	CRR073315	Gold flowering 1	2.021
	CRR073316	Gold flowering 2	1.934
	CRR073317	Gold flowering 3	1.083
	CRR073318	Tawny withering 1	20.444
	CRR073319	Tawny withering 2	10.093
	CRR073320	Tawny withering 3	16.975