Gene detail

Detail information of GWHGAAZE019250

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762317.1	0	PREDICTED: pectinesterase-like [Nicotiana sylvestris]
Swissprot	tr\|Q8GX86\|PME21_ARATH	0	Pectinesterase 21
trEMBL	tr\|A0A068VLQ4\|A0A068VLQ4_COFCA	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G05610.1	5E-176	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	35237251	35240951	+
GWHAAZE00000005	mRNA	35237251	35240951	+
GWHAAZE00000005	exon	35237251	35237829	+
GWHAAZE00000005	exon	35238592	35239009	+
GWHAAZE00000005	exon	35239359	35239682	+
GWHAAZE00000005	exon	35240332	35240951	+
GWHAAZE00000005	CDS	35237251	35237829	+
GWHAAZE00000005	CDS	35238592	35239009	+
GWHAAZE00000005	CDS	35239359	35239682	+
GWHAAZE00000005	CDS	35240332	35240951	+

Transcript Sequence
>GWHTAAZE019272 ATGGCGCAGAAAAAGGTGGTGTTGCTCGGCATCTCTTCTGTACTTTTGGTGGCCATGGTTATTGCCGCTGTAGTTAGTATGGGTGGCGGCAACGAGGACTACGACGAGAATGGCATGGCCACCTCCAAAAAAGCCATTAAGGACATTTGTCAAACAACCGACTACCAAAAAAGTTGCGTATCAAGCCTATCCTCAAACGCTGGCAACACCACCGACCCTAAGGAGCTCATTAGGGTTTCATTCGAGGTGGCCATGAAGGCCATAAAAGATGCGGTCACCAACTCAAATGTGATCAAAACCCTCGGCCAAGACCCTCGAACCAAGGAGGCTTTCGAAAACTGCAAGGAGCTCGCTGACTTAGCAGTTAACGACCTCAAACGAGCCTTTGAAAAGTTCGACCACTTTGACCTAAACACCTTAGATGAACTCATAGCCGATATACGGATATGGCTAAGCGGTTCAGTCACTTACCAAGAAACGTGCGTGAACGGGTTTGAGGACAACGAGGGGAAGGAAGCCGAGGTGATGAAAAAGGCGTTAAACACGTCCATGGAACTCACGAGCAATGCTCTTGCCATGGTGACAGAAATCTCGGCTGTCCTAACGTCTATTGAGAATCCGACGGTCACCAATCGCCGGCTCCTCTCTCTTGGCCTACCGCCGGTGTTGGGGCACGGAACTTTGTTCCCCGGGTGGATCGAGGTGGGGAAAGAGCGACTTCTTTTAGTGAAACCCGAGGAGATTAAGCCGGATGTAGTGGTGGCTAAGGATGGAAGTGGAAAATACAACACCATTAAACAAGCTTTGAATGATGTTCCTAAGAAGAGTAAGACAACATTTGTGATTTATATTAAGGAAGGGATTTATGAGGAGAAAGTTGAGGTTACTTCTAGTATGACACATTTGATGTTGATTGGGGATGGACCAAACAAGACAAGAATAACTGGGAGATTGAACTTTAAAGATGGAACAACTACTTACCATACGGCCACTGTTGTTGTGAATGGAGATAACTTCTTTGCCAAGGACATAGGGTTTGAGAACACTGCTGGTCCAGAAAAGCACCAAGCCGTGGCACTCCGCGTTAGTGCTGACAAGGCAATTTTCCAAAACTGCCACATGGATGGATACCAAGACACCCTCTACGCCCACACATACCGTCAATTCTATCGCAACTGTGTCATATCCGGAACCATTGACTTCATCTTTGGTGATAGTGCCGCCATCTTGCAAAACTGCACCTTGGTTGTCCGAAAGCCGATGGAGAATCAGAACTGCATTGTCACTGCACAAGGCAGGAAAGAAGTTCGTCAGCCTACAGGTCTGGTCCTCCAAAATTGCACCTTCAAGGCCGACCCAGAGTTCGACGAAGTCAAAGACAAGTTTGAAACCTACCTAGGCCGACCATGGAAAGAGTACTCAAGAACCGTCATCATGGAATCTTACATTGACGACTGGATCGAGCCGAAAGGTTGGTTACCATGGAGCGGTGATTTCGCCCTCAAAACCCTATTCTACACCGAGTTCAACAACCGTGGGCCCGGCGCATCCAAGAAGAACCGCGTCAAATGGGCAGGCATAAAGGAGGTCACGGTTGACCGGATCAAACGGTTCACGGCGGCCAAATTCTTTGAAGGTGACAAGTGGATACCATCCACAGGTGTGCCCTACAATGGAGGCCTAATTTATCCACCGCCAAAGAAAAATGACACAGCTGCTAGCCCCTACTCAAGGGAAGAAGGCATAGATATTAACATTGACAAGAATAAAGTAAAGACTTTTGAACCTTTTTTTGGCTTGGGGGCTAAAGCTCCATCTCCTCAAGCTAGTAGTAACTATGCCTTGGCACCAAATTCACAATTCTATGCTCCTGATTCAGCTCCTAGCCCTACCATATCATCAAAATCAAATTTGTCACTAAAGATGTTGCTTAGAGGTTAA

Network for GWHGAAZE019250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	45	193	5.30E-28
PF01095.20	Pectinesterase	251	547	7.60E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.179
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.158
	SRR3591708	Shoot apex	0.409
	SRR3591709	Stem	2.167
	SRR3591710	White floral bud	430.187
	SRR3591711	White flower	21.669
	SRR3591712	Green floral bud	357.864
	SRR3591713	Yellow flower	9.987
SRP173429	SRR8316895	Juvenile bud stage	0.340
	SRR8316896	Juvenile bud stage	0.946
	SRR8316897	Juvenile bud stage	6.152
	SRR8316894	Third green stage	9.169
	SRR8316900	Third green stage	165.299
	SRR8316901	Third green stage	155.094
	SRR8316898	Complete white stage	0.558
	SRR8316899	Complete white stage	1.348
	SRR8316903	Complete white stage	0.322
	SRR8316902	Silver flowering stage	3.569
	SRR8316904	Silver flowering stage	8.026
	SRR8316905	Silver flowering stage	2.383
	SRR8316906	Gold flowering stage	1.068
	SRR8316907	Gold flowering stage	0.245
	SRR8316908	Gold flowering stage	0.506
SRP132670	SRR6706286	Control	123.028
	SRR6706287	Light intensity 50%	120.456
	SRR6706288	Light intensity 20%	106.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	85.972
	CNS0095593	Slightly white alabastrum(diploid) 2	89.597
	CNS0095594	Slightly white alabastrum(diploid) 3	66.104
	CNS0095595	Whole white alabastrum(diploid) 2	441.484
	CNS0095596	Whole white alabastrum(diploid) 3	510.495
	CNS0095597	Whole white alabastrum(diploid) 4	629.583
	CNS0095598	Silvery flower (diploied) 1	15.447
	CNS0095599	Silvery flower (diploied) 2	61.439
	CNS0095600	Silvery flower (diploied) 3	15.329
	CNS0095601	Golden flower (diploid) 1	19.908
	CNS0095602	Golden flower (diploid) 2	13.231
	CNS0095603	Golden flower (diploid) 3	12.148
	CNS0095604	Slightly white alabastrum(tetraploid) 1	222.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	243.401
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	696.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	843.516
	CNS0095609	Whole white alabastrum(tetraploid) 3	352.684
	CNS0095610	Silvery flower (tetraploid) 1	9.948
	CNS0095611	Silvery flower (tetraploid) 2	44.968
	CNS0095612	Silvery flower (tetraploid) 3	109.473
	CNS0095613	Golden flower (tetraploid) 1	12.526
	CNS0095614	Golden flower (tetraploid) 2	3.193
	CNS0095615	Golden flower (tetraploid) 3	55.688
CRA001975	CRR073297	Stem 1	15.025
	CRR073298	Stem 2	10.901
	CRR073299	Stem 3	4.073
	CRR073300	Leaf 1	231.396
	CRR073301	Leaf 2	135.979
	CRR073302	Leaf 3	57.092
	CRR073303	Juvenile bud 1	192.538
	CRR073304	Juvenile bud 2	113.898
	CRR073305	Juvenile bud 3	19.238
	CRR073306	Third green 1	100.357
	CRR073307	Third green 2	104.683
	CRR073308	Third green 3	96.022
	CRR073309	Second white 1	3.232
	CRR073310	Second white 2	21.710
	CRR073311	Second white 3	21.929
	CRR073312	Silver flowering 1	108.985
	CRR073313	Silver flowering 2	115.475
	CRR073314	Silver flowering 3	60.145
	CRR073315	Gold flowering 1	75.262
	CRR073316	Gold flowering 2	26.314
	CRR073317	Gold flowering 3	21.790
	CRR073318	Tawny withering 1	107.402
	CRR073319	Tawny withering 2	96.502
	CRR073320	Tawny withering 3	90.060