Gene detail

Detail information of GWHGAAZE019272

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	8.3165E-137	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|P60839\|DRL2_ARATH	1E-55	Probable disease resistance protein At1g12290
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	3E-137	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT1G12290.1	2E-46	Disease resistance protein (CC-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	35927356	35930661	+
GWHAAZE00000005	mRNA	35927356	35930661	+
GWHAAZE00000005	exon	35927356	35930661	+
GWHAAZE00000005	CDS	35927356	35930661	+

Transcript Sequence
>GWHTAAZE019294 ATGGCTGGGCCTGAGATTGCTGTAGCAGTTTTTGCTGGGGCTACGTTACTGCAGAAAACTTACGAAAAATTGAAGGGCGAATCTGAATCTAAGAATGGTACGGAGATTCTTCCAACTTTGGCTGATGCTATACGAGAGCTGTGTGCATTACGGGACGATCGGGAGCATATATATCGTGCATACCGTCAAACAATGGAGCAAAGTAATAGATACCGGACCTGGCTCGAAGAGGTAAATAACTTGGAAGCGCGCGCGAATGGACTGACAAGGATGCATGAGGAACGAAAAAGAAACTTGTTGAAGAGAAGACCTTTTTCAGGATTGGGTAAAAAGATGAAAAGTGCGACTATTGAGGCACTGCGTCTTTACAAGCAGGTCATTGACGTTCTGCTGATCAAAAGGGGTCCCCTGCCCGTTGTGGAGATAGACACACAAAGCATAAAAGAATACCCAACACTTCAAAATTGCCTGAATTTGATATTACATCATCTACAGGACGATAGAGTTAAAGGAATTAGAGTGCATGGGATGTTTGGTGTAGGGAAAACGGTGATAATGCAGAACTTGAATAACCATAGAGATGTAGCTGGTACATTTGATTTAGTCATTTGGGTGAAAGTCTCGAACAACAGTCAGAACTTTAGCATCGGCCAAATGCAGAAAGATATTGCGACAAGAATGAAACTCAATATGGAAGACGGAGGTGATCCTGCAGGTGGAATACGAGAAAAGCTAGTGGATAAGAAGTATTTGTTGCTGCTTGATGATGTTAATGAAGATCTAGATTTGGAAGAAATTGGAATCCCTCCGCCTAGTGATAAGAATGGTAGCAAGATAGTATTGACAAGTCGGAAGAGTCGTGTTTGTAACTCGATCGTGAACAGGAGTGTTGAAGTTAAAAGATTAAGTAATCAAGAAGCACAAGCAATGTTTCGAAAAGTTCTGGGCGACTCAAGAACTTGGCCAGTTGTGCAACAAGTTATTGAATATTGTTCCCGCCTTCCATTTCTGATACAAACAATAGGAACCGCCTTTCAAAATAGAGAAACTGAGGACAGTTGGGCTAGAGGGTTGAATAACTTAAGACTTTTTCCGGATAAAGGAGATCCTGCCATTCAGAAAGCGTATAAATATTTAGAATTATGTTGTGAAGAGTTGAACAGCCCTCAGAAGGAATGCTTTTTATTCACTGCAATATTTCCGGAAGAGAGTGAGATAAATGCACATTGTTTATTGGATTGTTGGGCAGCTGAAGAGTTGTATGGCAATGACCAAGAGCGTGCCTATGGGCGTCAGATATTGGATGAGCTCAAGACGGCATCGTTACTGGAAGAAGGTACAAGTGGTCGTGGGGAGTATGTTAGGATGCACAAATTGATCCGCAAAGTTGCACTTGATAAGTTGTTTGCTGATAATGAACGTGAACATTTGGTGAGGACCAGTGAATCGTTACAAAACCCACCAGAAATTGATGATTTGAACCAGAAGTATCGAATCTCTTTGGCTGACAATAACCTAGGAGTTCTACAAGAATGCCCAAATTCTCCCCTGCTTTTCACACTTTTTCTACAAAAAAATCAAAGCTTGAACTCAATTCACATTGATTTCTTTAGGAAACTGAACAATCTTCGGGTTCTGAATTTGCAAAATACTGGAATTGAGTCAATACCATCTTCATTACTGAAGCTGAAAAATCTGAAAGTATTTTATGTCAATGATTGCACTAGTTTAGAGATACTTCCTCCCAAAATAGGAGAACTCAGCAGCCTCGAAGTCCTTGATATACGGGGAACTAGAGTCCAGATACTAGACGAGTCTTTTCTCTATAGACAGATTAGTAGAGTTGTTGACATTTATATTCCAAAATCGATATTTGGAGGACCCAATTCTGTTCCATTGGCGCCCTTCATTTATATTCCAAAAGCGATATTTGGAGGACCCAGTTCTGTTCCATTGGCGCCCTTCCCCAAGACCAATCGTCTGCGTCATCTAAAGCGTTTGTTGGTATCATTTAGTGACAATGGTAGTCAAGATGCTGAAGGTTTTTGTGGGGCGATCTCCAATATTTCTACTACATTGGAAGAACTGGTCATTGATGTGAATTCATACAAGAATTTGTGCAACAGAACCATAAATGATGTGAGAGATGGTGTTGCTACAATGCCAAGGCTCACAATTCTCAAGTTTATATTTAGAGATGGTGCTGAAGAAGTCATAAAAGTGGTGGCTGGTAATAAAAAAATCTACTTCCCCGAAGCAGGTGACCTTGCGAGTTTTCTCAACTCTGGCTCCACTTCATTTGAGGTTTATGTTGGCTGCTCAATCTCATCACATCAAATTCCCGAGATTAGCCAATACCAATGTAAATTGAAAGTTCACAACACGCAAGGAAGTAACTTCCCTACTCCGAATATTACAACACTGCTTCCTAGATGCAATGCATTTGAACTAGTTGACGACAATGGCCTTGAGCGTCTATCCCAGTTTGGAACTGTTGAAACTGCAAGCTTGGATGGGATCCATGGATGTCTAATTGAAGGCTGCAACAGAATTGGAACAATCGCAAATGGTGGTGACCCAGCATTATTGGCAAGCCGAATGCTATCGGGCTTGCTGGAATTATACATGAAGAATTTGCCGTTGTTGACAAGCATATGGACTGGCCCCTGGAAGGCGGGCAGCCTGCTTAATCTGGAGACCCTTTCAATTGAGGATTGCATTGGAATTCAAGAGCTACTTACTGATTCTACAATTACGTCAAATCTCCTACATCTGAGGAAGCTAATACTGGCTAATTTGCAAAACTTACACAGAATTTGTGCGAGTCAGGGTTCTAACTGGCCAGCCTTAGAAGAGCTCAGAATAGATGGTTGTCCCCTTTTAACTGAGTTACCCTTCCTACAGATGAACGCGAAGAACCTGAAGAAGCTAATGCTCGTCAATCTGCCAACCTTAACAAATTTTGCACATGTGGTGATATGGCCGAACTTGGAGGAGCTGCAGATGGATGGCTGTCTTGATATTTCTATGTTACCGTTGAGCAATCGTAGCACAACAAAACTGAGGAAGCTAATACTTATCAGTATGCCAAATTTAACGACTCTTAGCACAGATGCATCACTTGTTTCGCCTGCCCTAGAGGAGCTCGAGATAAGAGGTTGTCCAAGTCTGACCTTATTTGCTTTCGATCAGATTAGTGCTTCTAATCTGAGGTACATCAAAGCATCACAGGGGTGGTGGGACGCACTGACATGGCAAGATCCCAACATCAAAGACATCGTTCAAAGGTTTTTCCGCCCGCTTTAA

Network for GWHGAAZE019272

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	159	363	9.90E-37

Protein Sequence

>GWHPAAZE019283
MAGPEIAVAVFAGATLLQKTYEKLKGESESKNGTEILPTLADAIRELCALRDDREHIYRAYRQTMEQSNRYRTWLEEVNNLEARANGLTRMHEERKRNLLKRRPFSGLGKKMKSATIEALRLYKQVIDVLLIKRGPLPVVEIDTQSIKEYPTLQNCLNLILHHLQDDRVKGIRVHGMFGVGKTVIMQNLNNHRDVAGTFDLVIWVKVSNNSQNFSIGQMQKDIATRMKLNMEDGGDPAGGIREKLVDKKYLLLLDDVNEDLDLEEIGIPPPSDKNGSKIVLTSRKSRVCNSIVNRSVEVKRLSNQEAQAMFRKVLGDSRTWPVVQQVIEYCSRLPFLIQTIGTAFQNRETEDSWARGLNNLRLFPDKGDPAIQKAYKYLELCCEELNSPQKECFLFTAIFPEESEINAHCLLDCWAAEELYGNDQERAYGRQILDELKTASLLEEGTSGRGEYVRMHKLIRKVALDKLFADNEREHLVRTSESLQNPPEIDDLNQKYRISLADNNLGVLQECPNSPLLFTLFLQKNQSLNSIHIDFFRKLNNLRVLNLQNTGIESIPSSLLKLKNLKVFYVNDCTSLEILPPKIGELSSLEVLDIRGTRVQILDESFLYRQISRVVDIYIPKSIFGGPNSVPLAPFIYIPKAIFGGPSSVPLAPFPKTNRLRHLKRLLVSFSDNGSQDAEGFCGAISNISTTLEELVIDVNSYKNLCNRTINDVRDGVATMPRLTILKFIFRDGAEEVIKVVAGNKKIYFPEAGDLASFLNSGSTSFEVYVGCSISSHQIPEISQYQCKLKVHNTQGSNFPTPNITTLLPRCNAFELVDDNGLERLSQFGTVETASLDGIHGCLIEGCNRIGTIANGGDPALLASRMLSGLLELYMKNLPLLTSIWTGPWKAGSLLNLETLSIEDCIGIQELLTDSTITSNLLHLRKLILANLQNLHRICASQGSNWPALEELRIDGCPLLTELPFLQMNAKNLKKLMLVNLPTLTNFAHVVIWPNLEELQMDGCLDISMLPLSNRSTTKLRKLILISMPNLTTLSTDASLVSPALEELEIRGCPSLTLFAFDQISASNLRYIKASQGWWDALTWQDPNIKDIVQRFFRPL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.008
	SRR3591706	second leaf	0.399
	SRR3591707	mature leaf	0.364
	SRR3591708	Shoot apex	1.813
	SRR3591709	Stem	3.190
	SRR3591710	White floral bud	0.320
	SRR3591711	White flower	0.512
	SRR3591712	Green floral bud	0.222
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.687
	SRR8316896	Juvenile bud stage	5.736
	SRR8316897	Juvenile bud stage	0.425
	SRR8316894	Third green stage	2.851
	SRR8316900	Third green stage	4.581
	SRR8316901	Third green stage	3.247
	SRR8316898	Complete white stage	1.315
	SRR8316899	Complete white stage	19.982
	SRR8316903	Complete white stage	3.695
	SRR8316902	Silver flowering stage	0.386
	SRR8316904	Silver flowering stage	0.490
	SRR8316905	Silver flowering stage	0.056
	SRR8316906	Gold flowering stage	0.163
	SRR8316907	Gold flowering stage	0.220
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	8.020
	SRR6706287	Light intensity 50%	7.254
	SRR6706288	Light intensity 20%	7.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.780
	CNS0095593	Slightly white alabastrum(diploid) 2	6.229
	CNS0095594	Slightly white alabastrum(diploid) 3	3.625
	CNS0095595	Whole white alabastrum(diploid) 2	6.199
	CNS0095596	Whole white alabastrum(diploid) 3	2.693
	CNS0095597	Whole white alabastrum(diploid) 4	5.602
	CNS0095598	Silvery flower (diploied) 1	21.233
	CNS0095599	Silvery flower (diploied) 2	18.153
	CNS0095600	Silvery flower (diploied) 3	6.865
	CNS0095601	Golden flower (diploid) 1	21.171
	CNS0095602	Golden flower (diploid) 2	19.615
	CNS0095603	Golden flower (diploid) 3	19.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.379
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.107
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.042
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.129
	CNS0095610	Silvery flower (tetraploid) 1	0.307
	CNS0095611	Silvery flower (tetraploid) 2	1.353
	CNS0095612	Silvery flower (tetraploid) 3	0.397
	CNS0095613	Golden flower (tetraploid) 1	0.151
	CNS0095614	Golden flower (tetraploid) 2	0.306
	CNS0095615	Golden flower (tetraploid) 3	0.094
CRA001975	CRR073297	Stem 1	7.053
	CRR073298	Stem 2	6.527
	CRR073299	Stem 3	6.365
	CRR073300	Leaf 1	7.192
	CRR073301	Leaf 2	7.507
	CRR073302	Leaf 3	4.192
	CRR073303	Juvenile bud 1	6.453
	CRR073304	Juvenile bud 2	3.102
	CRR073305	Juvenile bud 3	17.446
	CRR073306	Third green 1	0.062
	CRR073307	Third green 2	0.412
	CRR073308	Third green 3	0.859
	CRR073309	Second white 1	0.036
	CRR073310	Second white 2	0.055
	CRR073311	Second white 3	0.031
	CRR073312	Silver flowering 1	0.009
	CRR073313	Silver flowering 2	0.064
	CRR073314	Silver flowering 3	0.148
	CRR073315	Gold flowering 1	1.592
	CRR073316	Gold flowering 2	2.923
	CRR073317	Gold flowering 3	2.387
	CRR073318	Tawny withering 1	56.014
	CRR073319	Tawny withering 2	36.092
	CRR073320	Tawny withering 3	55.456