Gene detail

Detail information of GWHGAAZE019310

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP28204.1	hypothetical protein JCGZ_13975 [Jatropha curcas]
Swissprot	tr\|P93033\|FUM1_ARATH	Fumarate hydratase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A067K8V6\|A0A067K8V6_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP28204.1}
TAIR10	AT5G50950.2	FUMARASE 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	37038266	37048431	+
GWHAAZE00000005	mRNA	37038266	37048431	+
GWHAAZE00000005	exon	37038266	37038432	+
GWHAAZE00000005	exon	37038750	37038867	+
GWHAAZE00000005	exon	37039193	37039342	+
GWHAAZE00000005	exon	37040230	37040340	+
GWHAAZE00000005	exon	37041963	37042046	+
GWHAAZE00000005	exon	37044272	37044370	+
GWHAAZE00000005	exon	37044458	37044508	+
GWHAAZE00000005	exon	37044659	37044708	+
GWHAAZE00000005	exon	37045851	37045932	+
GWHAAZE00000005	exon	37046056	37046150	+
GWHAAZE00000005	exon	37046260	37046326	+
GWHAAZE00000005	exon	37046469	37046519	+
GWHAAZE00000005	exon	37046673	37046768	+
GWHAAZE00000005	exon	37047994	37048092	+
GWHAAZE00000005	exon	37048199	37048228	+
GWHAAZE00000005	exon	37048312	37048431	+
GWHAAZE00000005	five_prime_UTR	37038266	37038271	+
GWHAAZE00000005	CDS	37038272	37038432	+
GWHAAZE00000005	CDS	37038750	37038867	+
GWHAAZE00000005	CDS	37039193	37039342	+
GWHAAZE00000005	CDS	37040230	37040340	+
GWHAAZE00000005	CDS	37041963	37042046	+
GWHAAZE00000005	CDS	37044272	37044370	+
GWHAAZE00000005	CDS	37044458	37044508	+
GWHAAZE00000005	CDS	37044659	37044708	+
GWHAAZE00000005	CDS	37045851	37045932	+
GWHAAZE00000005	CDS	37046056	37046150	+
GWHAAZE00000005	CDS	37046260	37046326	+
GWHAAZE00000005	CDS	37046469	37046519	+
GWHAAZE00000005	CDS	37046673	37046768	+
GWHAAZE00000005	CDS	37047994	37048092	+
GWHAAZE00000005	CDS	37048199	37048228	+
GWHAAZE00000005	CDS	37048312	37048431	+

Transcript Sequence
>GWHTAAZE019332 GAAGTTATGGCGATGTTCATAGCATATCGTCGATTATCAAGCGGATCAACCTCCTCATCAGTTGTTGTAGCAGGAATGTTACGTTTTACAACTTGTTGGAGATCCTTCTCTACCTCTTTCAGGGAGGAAAGAGACACCTTCGGACCTATTCAAGTTCCATCCGACAAATTATGGGGTGCTCAAACTCAAAGATCATTGCAAAATTTTGAAATTGGAGGCGAGCGTGAACGAATGCCAGAGCCTATTGTTCGTGCTTTTGGCATCCTTAAAAAATGTGCTGCCAAGGTGAACATGGAGTATGGTCTTGATCCATCCATAGGGAAAGCAATAATGCAATCTGCTCAAGAAGTGGCTGAGGGCAAATTGAATGATCATTTTCCACTGGTGGTATGGCAAACTGGCAGTGGCACTCAAAGTAATATGAATGCCAACGAGGTAATTGCAAATAGAGCATCTGAAATTCTTGGTCATAAGAGAGGTGAAAAGTTTGTGCATCCAAATGACCATGTGAACAGATCGCAATCGTCTAATGATACATTCCCCACAGTAATGCACATTGCTGCAGCGATGGAAATTAATTCAAGGTTGATACCAAGTCTGAAACAATTACAGACTTCACTACATTCAAAGTCAATTGAATTCAAAGATATTGTTAAGATTGGACGAACCCACACCCAAGATGCAACACCTTTGACTCTTGGACAAGAATTTAGTGGTTATACAACACAAGTGAAGTATGGAATTGACAGAGTCATGTGCACCCTTCCTCGCATGTATCAGCTTGCACAGGGTGGCACCGCTGTTGGGACTGGATTGAACACAAAGAAAGGGTTTGATGCAAAGATCGCTGCTGCAGTAGCTGAGGAAACAAAGTTACCATTCGTAACAGCTGAAAACAAGTTTGAAGCACTGGCTGCGCATGATGCTTTTGTTGAAACTAGTGGAGCCCTAAATACAGTTGCTGCTTCTCTTATGAAGATTGGCAATGATATACGCTTGTTAGGAAGTGGTCCGCGTTGCGGTCTTGGTGAACTCATTCTCCCTGAAAATGAACCTGGCAGCAGTATCATGCCTGGGAAGGTGAACCCTACTCAGTGCGAGGCTCTGACAATGGTCTGTGCTCAGACAATGGGAAACAATGTGGCAATTACAGTGGGCGGGTCAAATGGCCATTTTGAGCTGAATGTCTTCAAGCCATTGATGGCTAGTTGTCTCCTGCATTCATTGAGGCTGTTGGCGGATGCATCTGCTTCTTTTGAAAAGAACTGTGTGAGGGGAATTCAGGCCAATAAGGAAAGGATTTCTAAATTACTTCATGAGTCACTCATGCTTGTTACGTCCTTGAACCCTAAAATCGGTTACGACAACGCCGCCGCAGTTGCTAAGAAAGCTCACAAAGAGGGAAGTACACTGAAGGTAATGGTTCTCTCTCAATTGCAAGCATTACTGAAATGTCAATTTGCAAGTTGA

Network for GWHGAAZE019310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00206.21	Lyase_1	46	376	1.60E-116
PF10415.10	FumaraseC_C	442	475	1.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01679	E4.2.1.2B, fumC, FH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0006106	biological_process	fumarate metabolic process
GO:0045239	cellular_component	tricarboxylic acid cycle enzyme complex
GO:0016829	molecular_function	lyase activity
GO:0004333	molecular_function	fumarate hydratase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.346
	SRR3591706	second leaf	29.401
	SRR3591707	mature leaf	25.955
	SRR3591708	Shoot apex	54.238
	SRR3591709	Stem	43.338
	SRR3591710	White floral bud	55.185
	SRR3591711	White flower	55.737
	SRR3591712	Green floral bud	81.886
	SRR3591713	Yellow flower	46.405
SRP173429	SRR8316895	Juvenile bud stage	45.474
	SRR8316896	Juvenile bud stage	64.900
	SRR8316897	Juvenile bud stage	38.460
	SRR8316894	Third green stage	29.829
	SRR8316900	Third green stage	109.315
	SRR8316901	Third green stage	92.912
	SRR8316898	Complete white stage	37.510
	SRR8316899	Complete white stage	89.976
	SRR8316903	Complete white stage	58.769
	SRR8316902	Silver flowering stage	31.426
	SRR8316904	Silver flowering stage	38.881
	SRR8316905	Silver flowering stage	22.519
	SRR8316906	Gold flowering stage	71.122
	SRR8316907	Gold flowering stage	69.293
	SRR8316908	Gold flowering stage	87.312
SRP132670	SRR6706286	Control	73.070
	SRR6706287	Light intensity 50%	78.969
	SRR6706288	Light intensity 20%	84.817
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.746
	CNS0095593	Slightly white alabastrum(diploid) 2	53.478
	CNS0095594	Slightly white alabastrum(diploid) 3	45.770
	CNS0095595	Whole white alabastrum(diploid) 2	58.832
	CNS0095596	Whole white alabastrum(diploid) 3	62.640
	CNS0095597	Whole white alabastrum(diploid) 4	52.424
	CNS0095598	Silvery flower (diploied) 1	30.698
	CNS0095599	Silvery flower (diploied) 2	28.072
	CNS0095600	Silvery flower (diploied) 3	58.285
	CNS0095601	Golden flower (diploid) 1	26.524
	CNS0095602	Golden flower (diploid) 2	46.154
	CNS0095603	Golden flower (diploid) 3	41.712
	CNS0095604	Slightly white alabastrum(tetraploid) 1	76.788
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.326
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.996
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	98.082
	CNS0095610	Silvery flower (tetraploid) 1	72.940
	CNS0095611	Silvery flower (tetraploid) 2	74.048
	CNS0095612	Silvery flower (tetraploid) 3	96.813
	CNS0095613	Golden flower (tetraploid) 1	40.456
	CNS0095614	Golden flower (tetraploid) 2	62.828
	CNS0095615	Golden flower (tetraploid) 3	38.582
CRA001975	CRR073297	Stem 1	76.501
	CRR073298	Stem 2	66.291
	CRR073299	Stem 3	51.971
	CRR073300	Leaf 1	109.699
	CRR073301	Leaf 2	102.883
	CRR073302	Leaf 3	88.767
	CRR073303	Juvenile bud 1	99.459
	CRR073304	Juvenile bud 2	94.071
	CRR073305	Juvenile bud 3	93.999
	CRR073306	Third green 1	55.758
	CRR073307	Third green 2	45.825
	CRR073308	Third green 3	50.105
	CRR073309	Second white 1	64.681
	CRR073310	Second white 2	63.098
	CRR073311	Second white 3	54.608
	CRR073312	Silver flowering 1	48.803
	CRR073313	Silver flowering 2	51.120
	CRR073314	Silver flowering 3	45.323
	CRR073315	Gold flowering 1	21.758
	CRR073316	Gold flowering 2	34.088
	CRR073317	Gold flowering 3	20.322
	CRR073318	Tawny withering 1	48.960
	CRR073319	Tawny withering 2	52.324
	CRR073320	Tawny withering 3	56.313