Gene detail

Detail information of GWHGAAZE019337

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006444361.1	4.88396E-66	hypothetical protein CICLE_v10022870mg [Citrus clementina]
Swissprot	tr\|Q9M9W1\|RL222_ARATH	6E-64	60S ribosomal protein L22-2
trEMBL	tr\|A0A067HH07\|A0A067HH07_CITSI	2E-66	Uncharacterized protein {ECO:0000313\|EMBL:KDO87201.1}
TAIR10	AT3G05560.3	3E-44	Ribosomal L22e protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	38309056	38311582	-
GWHAAZE00000005	mRNA	38309056	38311582	-
GWHAAZE00000005	exon	38311347	38311582	-
GWHAAZE00000005	exon	38309056	38309381	-
GWHAAZE00000005	CDS	38311347	38311582	-
GWHAAZE00000005	CDS	38309237	38309381	-
GWHAAZE00000005	three_prime_UTR	38309056	38309236	-

Transcript Sequence
>GWHTAAZE019359 ATGAGTCGAGGAGGTGCGGCAGGTGGTGCCAAGGGAGGGAAGAAGAAGGGATCGACGTTCACGATCGACTGCGGGAAGCCGGTCGAGGATAAGATTATGGAGATCGCTTCACTGGAAAAGTTTCTCCAGGAGAGGATTAAGGTCGGCGGTAAAGCTGGAGCTCTCGGTGATTCTGTTACTGTTACTCGCGAGAAGAGTAAGATTACTGTCACTTCTGACAGTAATTTCTCCAAGAGGTACTTGAAGTACTTGACAAAAAAGTACCTAAAGAAGAACAATGTGAGGGACTGGCTCAGGGTGATAGCCTCAAACAAGGACAGGAATGTTTATGAATTGCGATACTTCAATATTGCCGAAAACGAAGGTGAGGAGGAAGACTGATACTGTCGAATTGGTTTTTTCATAGACTGAAAGTGAGTTGGAAGATTGATAATGTGGAATCACTTCTTCTAATCATTTATGATCGTAAACTTCTGTAATAGTCGTAGATTTTGTCGAAGTTTAATTTTGGAATTTGCGTGCAATGCATTTTTGCTACTTTTGGACGTGGAAATGTGTGTTG

Network for GWHGAAZE019337

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01776.18	Ribosomal_L22e	16	124	6.70E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02891	RP-L22e, RPL22	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	97.255
	SRR3591706	second leaf	37.438
	SRR3591707	mature leaf	14.388
	SRR3591708	Shoot apex	109.740
	SRR3591709	Stem	48.456
	SRR3591710	White floral bud	27.976
	SRR3591711	White flower	43.462
	SRR3591712	Green floral bud	76.565
	SRR3591713	Yellow flower	32.810
SRP173429	SRR8316895	Juvenile bud stage	67.290
	SRR8316896	Juvenile bud stage	90.893
	SRR8316897	Juvenile bud stage	37.975
	SRR8316894	Third green stage	36.291
	SRR8316900	Third green stage	123.955
	SRR8316901	Third green stage	116.937
	SRR8316898	Complete white stage	16.439
	SRR8316899	Complete white stage	71.539
	SRR8316903	Complete white stage	26.368
	SRR8316902	Silver flowering stage	15.186
	SRR8316904	Silver flowering stage	16.215
	SRR8316905	Silver flowering stage	10.634
	SRR8316906	Gold flowering stage	27.372
	SRR8316907	Gold flowering stage	33.125
	SRR8316908	Gold flowering stage	30.933
SRP132670	SRR6706286	Control	123.987
	SRR6706287	Light intensity 50%	121.978
	SRR6706288	Light intensity 20%	132.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	164.494
	CNS0095593	Slightly white alabastrum(diploid) 2	187.264
	CNS0095594	Slightly white alabastrum(diploid) 3	145.506
	CNS0095595	Whole white alabastrum(diploid) 2	132.802
	CNS0095596	Whole white alabastrum(diploid) 3	154.955
	CNS0095597	Whole white alabastrum(diploid) 4	86.219
	CNS0095598	Silvery flower (diploied) 1	62.213
	CNS0095599	Silvery flower (diploied) 2	62.165
	CNS0095600	Silvery flower (diploied) 3	39.049
	CNS0095601	Golden flower (diploid) 1	50.186
	CNS0095602	Golden flower (diploid) 2	32.285
	CNS0095603	Golden flower (diploid) 3	33.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	82.399
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.448
	CNS0095606	Slightly white alabastrum(tetraploid) 3	114.173
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.332
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.215
	CNS0095610	Silvery flower (tetraploid) 1	38.625
	CNS0095611	Silvery flower (tetraploid) 2	25.384
	CNS0095612	Silvery flower (tetraploid) 3	15.868
	CNS0095613	Golden flower (tetraploid) 1	22.826
	CNS0095614	Golden flower (tetraploid) 2	37.437
	CNS0095615	Golden flower (tetraploid) 3	10.107
CRA001975	CRR073297	Stem 1	49.248
	CRR073298	Stem 2	55.083
	CRR073299	Stem 3	50.481
	CRR073300	Leaf 1	53.801
	CRR073301	Leaf 2	51.393
	CRR073302	Leaf 3	49.673
	CRR073303	Juvenile bud 1	44.309
	CRR073304	Juvenile bud 2	26.899
	CRR073305	Juvenile bud 3	29.807
	CRR073306	Third green 1	5.621
	CRR073307	Third green 2	4.070
	CRR073308	Third green 3	6.840
	CRR073309	Second white 1	10.447
	CRR073310	Second white 2	11.134
	CRR073311	Second white 3	2.815
	CRR073312	Silver flowering 1	8.611
	CRR073313	Silver flowering 2	8.581
	CRR073314	Silver flowering 3	5.765
	CRR073315	Gold flowering 1	24.942
	CRR073316	Gold flowering 2	19.607
	CRR073317	Gold flowering 3	24.096
	CRR073318	Tawny withering 1	66.318
	CRR073319	Tawny withering 2	60.830
	CRR073320	Tawny withering 3	65.826