Gene detail

Detail information of GWHGAAZE019341

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	1.8244E-108	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9T048\|DRL27_ARATH	4E-39	Disease resistance protein At4g27190
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	7E-109	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT4G27190.1	3E-33	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	38530101	38532839	+
GWHAAZE00000005	mRNA	38530101	38532839	+
GWHAAZE00000005	exon	38530101	38532839	+
GWHAAZE00000005	CDS	38530101	38532839	+

Transcript Sequence
>GWHTAAZE019363 ATGGCTGAGATAGCTATAGTTTTTAGTGGATTGACTTTTTCGGTGGCCGTCTGCAAACTGCTGATACAGCTGAAGTCCAAAATTCACACTTCAAAAGATCAGAAAGAGATTCGTTCATATCTGGGTGAAGCTATGGGCAGGCTAAGTTCATTAGTGGAGCATCGGAAGAATAAATTTGTTAGGGAAAAAGGTCCCAGCGAGAAGCAAACTACGACATACGAAAACTGGGTCTTCAGAGTAGAGAATTTCCAAAGTGAAGTGAAGAGCCTGGAAGATGAGGACAAGAGAAAGAAACAAAAGTTGTTGAAAAATCCTCTATCAAATTCCGTTGGAAGCATGAAAAAAATGGCTATCAGAGCAATTGATCTTTGCATGGAGAACCTAGATGATCTGTGTGTTGCAATGCCTCCGAAAAGGGTTGAGTTGATGACTGCTCCACGCATAGAAGAATATCCAACACTTCGAAAGTCCCTGCAGTCGATAGTGGATCTTTTAAAAGATCACTCTAAATTTGATTGTATCAGAGTGCAAGGGGAATTTGGCGTAGGGAAAACAGCAATATTGAAGAACTTGAATAACCAAGAAGACGTAGCTAAGATGTTTGATTTAGTCATTTGGGTGAATGTTTCCGATGAAGAAAATGTTACGAACTTTGACGTCAGCAAAATGCAGAAAGAGATTGCTAACAGATTGAATATTAATATGGAAGGCAAGGTTGATTTTGCAGATAGAATAAAACTTGAGTTGAAGAATAAGCGGTATTTGTTGCTTCTTAATCGTGTTAGTGGGGAAATTAATTTTGAAGATATTGGAATTTTTCATCGTGATGATTATCTCGGTAGCAAGATAGTATTTACAAGTCAGTTTAATCACGTTTGTCGTGGGATGGTGACAGAGAGTGTCAAAGTGAAGCGATTACTTGATCAAGAAGCACAAAAAATGTTTTTGAAATTTCTGGACGCCGAAACATTTTTGCAGTATATGCATGATGTTTTTGAATACTGTTCCCGACTTCCTTATATCATAGAAAAAATAGCAGGAGCCTTCAAAGATAAAAAATCACATGATAGTGAGTGGGAGGAAGGATTGAATAACTTAAGGCTTTCTCCCAGTAATGGAGATGGTTCCATTGAGAAGGTGTCTCGACTTATAGAATTTTGTTATAATGCCTTGCAGGAGGAAGAAAAGGTTTGCTTTTTATACAGTGCACTAAATCAAGGAGAGATTGACATCAGCACCAAATATTTATTGGATTGTTGGGCAGCTGAAGAGCTATATGGCATTAACCAAGAGCGTGCTTTGGGGAATAATATATTGAATAAGCTCAAGACGGCATCATTAATTGGAGAAAGTGAGTGTGGGCCTAGCGAGTATGTTAGGATTTACAAATTTGCCTGGCAAATGGCACGGCTTAAGTTAAGAGCTGATGATAGTGTGTGGGTGGAAACTGGTATACAAGATCGCTTAGATGTCAAAGACTGGAACCAGAAGCATCGAATCTCTTTGGTTGACGTTGAGCTAGGACCCCTTCCAGATTGCCCGGATTCTCCCAATCTTTCGACTCTTTTTTTACAAAGAAATCAAAGTTTGTACACAATTCCTACTACTTTCTTTGAAAAAAAGGGAAATCTTCGGGTTCTGAACTTGCAACATTCTGGAATTACTTCACTACCACCTTCGTTAGGGGAGCTGAAAAAATTGAAAGTATTCTATCTGAATGGTTGCACTAGTTTACCGAAGCTTCCCCCCGAAATACAACAGATGGAGAGCCTCGAAGTGCTTGATACACGTGGTACCGGACTAGACATAATACAAGGCTCTGAAGAACCCAGTTGTGGCCAACAGACACCTTTGCCAAGCATCCAGGCTCTGAAACGCCTAAAGCGTTTGTTGGTATCCTTAAATGCCTCTGGCTATCAAAAAGCTTGTCAAGATGTTTTACATTTTTTTAGGACGATCTCCAATATGTCTGCTGCATTAGAAGAACTGATCATCCATGTCAATTCATCCCAGACAGCCACCTGCGACAAGATGATAAATGATGTGAGAGAAATTGTTGTTACCATGAAAAAGCTGAGACTTCTCAAGTTTCAATTTGTAGATGGTGCTGAAGAAGTCATAGTAGTGGATATTGGTATTAGAAAAACCTTCTTTCCCGAAGCAGGTGATCTTGCAACTCATTTCAATGTGAAAAACTGTCACAACCCCCAACCAATTCAGGTTTTCGTCGGCTGCTCAATCTCGTCAAATCAAATTCCTGACATTAAACGATATGAAAAGTACTTAAAAATTTGCAACGCACAAGGCCTTAACGTTCCTTTGACCAGTAGTCCGGGGATTCCTTTCTTCCATGCATTTGAACTGGTTAACCATCGTGACCTTAAGCATCTATCCATGTTTGAAACTGCATGCCTCAGTGGTGTCAAAGCATGTCTAATCGAAGGCTGCAACAAACTTGAAGCAATTGTGGACGGTCACTGCATCACGGACAACAGCTCAATGCTACCAAAATTGCAGGAATTATACTTGAAGAAATTGCAGCTGTTGAAAAGCATATGGAAGGGACCCTGGAAAGCAGACAGCCTGGTTGAACTGGAGACCCTGGTAATTGAGGACTGCAATGGAATTGAAGAGCTACTTACTGCTGGTCCTAGGGCTTCGTTGAATCTCCCAAAGCTAAAGAAGCTAATACTTACAAATTTGCCAAATTTAAAAAGATCTGCTGAATGTGGAAGATGA

Network for GWHGAAZE019341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	158	389	9.50E-24
PF13855.7	LRR_8	517	575	7.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.027
	SRR3591712	Green floral bud	0.020
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.019
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.025
	SRR8316900	Third green stage	0.114
	SRR8316901	Third green stage	0.026
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.049
	SRR8316906	Gold flowering stage	0.028
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.020
SRP132670	SRR6706286	Control	0.053
	SRR6706287	Light intensity 50%	0.064
	SRR6706288	Light intensity 20%	0.058
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.034
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.009
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.260
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.215
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.065
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.177
	CNS0095612	Silvery flower (tetraploid) 3	0.060
	CNS0095613	Golden flower (tetraploid) 1	0.002
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.025
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.053
	CRR073301	Leaf 2	0.049
	CRR073302	Leaf 3	0.028
	CRR073303	Juvenile bud 1	0.016
	CRR073304	Juvenile bud 2	0.075
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000