Detail information of GWHGAAZE019350


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006344682.16.29128E-35PREDICTED: uncharacterized protein LOC102581385 [Solanum tuberosum]
trEMBLtr|M1CAU3|M1CAU3_SOLTU2E-35Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063581}
TAIR10AT3G05545.15E-10RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3897192938973140-
GWHAAZE00000005mRNA3897192938973140-
GWHAAZE00000005exon3897192938971957-
GWHAAZE00000005exon3897287638973140-
GWHAAZE00000005CDS3897287638973140-
GWHAAZE00000005CDS3897192938971957-
Transcript Sequence

Network for GWHGAAZE019350

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0109


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.505
SRR3591706second leaf0.361
SRR3591707mature leaf0.722
SRR3591708Shoot apex1.150
SRR3591709Stem0.459
SRR3591710White floral bud1.037
SRR3591711White flower0.772
SRR3591712Green floral bud0.269
SRR3591713Yellow flower3.071
SRP173429 SRR8316895Juvenile bud stage 0.575
SRR8316896Juvenile bud stage 0.403
SRR8316897Juvenile bud stage 0.134
SRR8316894Third green stage 0.149
SRR8316900Third green stage 0.442
SRR8316901Third green stage 0.729
SRR8316898Complete white stage 0.259
SRR8316899Complete white stage 1.021
SRR8316903Complete white stage 0.216
SRR8316902Silver flowering stage0.306
SRR8316904Silver flowering stage0.208
SRR8316905Silver flowering stage0.203
SRR8316906Gold flowering stage 1.491
SRR8316907Gold flowering stage 1.499
SRR8316908Gold flowering stage 1.091
SRP132670SRR6706286Control0.532
SRR6706287Light intensity 50%0.578
SRR6706288Light intensity 20%0.985
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.864
CNS0095593Slightly white alabastrum(diploid) 20.531
CNS0095594Slightly white alabastrum(diploid) 30.263
CNS0095595Whole white alabastrum(diploid) 20.649
CNS0095596Whole white alabastrum(diploid) 30.217
CNS0095597Whole white alabastrum(diploid) 40.322
CNS0095598Silvery flower (diploied) 10.064
CNS0095599Silvery flower (diploied) 20.315
CNS0095600Silvery flower (diploied) 30.940
CNS0095601Golden flower (diploid) 10.719
CNS0095602Golden flower (diploid) 21.543
CNS0095603Golden flower (diploid) 30.263
CNS0095604Slightly white alabastrum(tetraploid) 112.266
CNS0095605Slightly white alabastrum(tetraploid) 212.083
CNS0095606Slightly white alabastrum(tetraploid) 316.558
CNS0095607Whole white alabastrum(tetraploid) 18.967
CNS0095608Whole white alabastrum(tetraploid) 28.463
CNS0095609Whole white alabastrum(tetraploid) 312.972
CNS0095610Silvery flower (tetraploid) 116.123
CNS0095611Silvery flower (tetraploid) 213.006
CNS0095612Silvery flower (tetraploid) 312.335
CNS0095613Golden flower (tetraploid) 16.716
CNS0095614Golden flower (tetraploid) 217.227
CNS0095615Golden flower (tetraploid) 315.631
CRA001975CRR073297Stem 10.752
CRR073298Stem 20.579
CRR073299Stem 30.530
CRR073300Leaf 11.030
CRR073301Leaf 21.293
CRR073302Leaf 31.133
CRR073303Juvenile bud 11.337
CRR073304Juvenile bud 21.165
CRR073305Juvenile bud 31.867
CRR073306Third green 11.137
CRR073307Third green 21.168
CRR073308Third green 30.263
CRR073309Second white 10.343
CRR073310Second white 20.776
CRR073311Second white 31.372
CRR073312Silver flowering 10.730
CRR073313Silver flowering 21.345
CRR073314Silver flowering 31.189
CRR073315Gold flowering 10.345
CRR073316Gold flowering 20.180
CRR073317Gold flowering 31.105
CRR073318Tawny withering 10.292
CRR073319Tawny withering 20.343
CRR073320Tawny withering 31.810