Detail information of GWHGAAZE019358


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010043052.13.47444E-14PREDICTED: uncharacterized protein LOC104432283 isoform X1 [Eucalyptus grandis]
trEMBLtr|A0A059D2W3|A0A059D2W3_EUCGR1E-14Uncharacterized protein {ECO:0000313|EMBL:KCW85073.1}
TAIR10AT2G47700.10.000000001RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3918328339183620-
GWHAAZE00000005mRNA3918328339183620-
GWHAAZE00000005exon3918328339183329-
GWHAAZE00000005exon3918349739183620-
GWHAAZE00000005CDS3918349739183620-
GWHAAZE00000005CDS3918328339183329-
Transcript Sequence

Network for GWHGAAZE019358

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_1115411.30E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.848
SRR3591706second leaf7.269
SRR3591707mature leaf6.708
SRR3591708Shoot apex10.458
SRR3591709Stem7.628
SRR3591710White floral bud12.347
SRR3591711White flower15.881
SRR3591712Green floral bud11.940
SRR3591713Yellow flower15.434
SRP173429 SRR8316895Juvenile bud stage 6.381
SRR8316896Juvenile bud stage 10.917
SRR8316897Juvenile bud stage 3.760
SRR8316894Third green stage 5.588
SRR8316900Third green stage 14.093
SRR8316901Third green stage 15.769
SRR8316898Complete white stage 5.446
SRR8316899Complete white stage 19.207
SRR8316903Complete white stage 11.392
SRR8316902Silver flowering stage8.038
SRR8316904Silver flowering stage9.718
SRR8316905Silver flowering stage4.271
SRR8316906Gold flowering stage 25.155
SRR8316907Gold flowering stage 24.244
SRR8316908Gold flowering stage 24.188
SRP132670SRR6706286Control19.881
SRR6706287Light intensity 50%21.640
SRR6706288Light intensity 20%20.021
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.999
CNS0095593Slightly white alabastrum(diploid) 220.711
CNS0095594Slightly white alabastrum(diploid) 322.661
CNS0095595Whole white alabastrum(diploid) 219.739
CNS0095596Whole white alabastrum(diploid) 312.025
CNS0095597Whole white alabastrum(diploid) 412.059
CNS0095598Silvery flower (diploied) 116.546
CNS0095599Silvery flower (diploied) 212.383
CNS0095600Silvery flower (diploied) 317.596
CNS0095601Golden flower (diploid) 17.356
CNS0095602Golden flower (diploid) 212.454
CNS0095603Golden flower (diploid) 311.853
CNS0095604Slightly white alabastrum(tetraploid) 19.325
CNS0095605Slightly white alabastrum(tetraploid) 28.214
CNS0095606Slightly white alabastrum(tetraploid) 312.370
CNS0095607Whole white alabastrum(tetraploid) 17.408
CNS0095608Whole white alabastrum(tetraploid) 27.883
CNS0095609Whole white alabastrum(tetraploid) 310.012
CNS0095610Silvery flower (tetraploid) 114.536
CNS0095611Silvery flower (tetraploid) 213.027
CNS0095612Silvery flower (tetraploid) 38.485
CNS0095613Golden flower (tetraploid) 111.576
CNS0095614Golden flower (tetraploid) 212.752
CNS0095615Golden flower (tetraploid) 316.858
CRA001975CRR073297Stem 122.624
CRR073298Stem 223.265
CRR073299Stem 325.810
CRR073300Leaf 128.911
CRR073301Leaf 231.397
CRR073302Leaf 331.975
CRR073303Juvenile bud 145.762
CRR073304Juvenile bud 229.890
CRR073305Juvenile bud 328.154
CRR073306Third green 119.629
CRR073307Third green 220.470
CRR073308Third green 321.017
CRR073309Second white 124.552
CRR073310Second white 233.655
CRR073311Second white 340.172
CRR073312Silver flowering 131.346
CRR073313Silver flowering 235.206
CRR073314Silver flowering 325.190
CRR073315Gold flowering 119.983
CRR073316Gold flowering 225.329
CRR073317Gold flowering 312.279
CRR073318Tawny withering 129.342
CRR073319Tawny withering 246.483
CRR073320Tawny withering 329.112