Gene detail

Detail information of GWHGAAZE019368

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613727.1	0	PREDICTED: alpha-L-fucosidase 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GW72\|FUCO1_ARATH	2E-163	Alpha-L-fucosidase 1 (Precursor)
trEMBL	tr\|V4U6Z1\|V4U6Z1_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR35024.1}
TAIR10	AT2G28100.1	6E-130	alpha-L-fucosidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	39510352	39514506	-
GWHAAZE00000005	mRNA	39510352	39514506	-
GWHAAZE00000005	exon	39510352	39511006	-
GWHAAZE00000005	exon	39513530	39513769	-
GWHAAZE00000005	exon	39513965	39514506	-
GWHAAZE00000005	CDS	39513965	39514506	-
GWHAAZE00000005	CDS	39513530	39513769	-
GWHAAZE00000005	CDS	39510352	39511006	-

Transcript Sequence
>GWHTAAZE019390 ATGACTATGCACTTCTTTTTTTTTTGTTGTTTCATATTTCTAATAGTATTCGAATTTGCATATTCTAAACCACAGAGAGTAACACCACCACCATTACCTGTACTTCCATTGCCATCATACTCCCAAATTGAATGGCAACAGAGAGAAATCATAATGTTCCTTCACTTTGGTGTCAACACATTCACTGACTCCGAGTGGGGCACTGGTCGAGAAAACCCGGCTATATTCAACCCGGTTGGACTTGACGCCAACCAGTGGGTCGACACGGCAAGTCAACTCGGTGTCAATCTTGTGATCCTCACAGCAAAACATCACGACGGATTCTGCTTGTGGCCGTCAAAATACACTGACCATTCGGTTATCGGAAGCCCGTGGAAAAATGGCAAAGGTGACGTCGTTCAAGAACTTGTTAATGCTGCAAAGCGCCGCGGAGTAGACGTGGGCCTTTATCTCTCGCCCTGGGATCGCCATGATGGAAGATACGGCCAAACTAAAGAGTACAATGAGTACTATTTAGCTCAACTACAAGAACTTCTCAATAAATATGGAAGTGTCAAAGAAATATGGTTTGATGGAGCGAAGGGTTCGAATGCGCCGAATATGTCGTATTATTTCAGTGATTGGTTCTCAATGGTGAAGGAATTGCAGAGTACAATCAATATTTTTTCGAATGCAGGACCGGATGTTAGGTGGGTCGGAGATGAGAAGGGGTTCGCCGGAAGTACTAGTTGGTCCACAATTAATCGGACGTCCCTATCAATCGGAAATGGAATTATTGTTGACTATCTCAACACCGGTGATCCGAAAGGGACCGATTGGATACCAGCAGAGTGCGATGTTTCTGTCCGAACAGGTTGGTTTTGGCATAAATCACAATCACCCAAGAACCTCACTGACCTACTTAACATTTACTACAATTCCGTGGGACGAAATTGTGTGCTACTATTAAATGTGCCCCCTAATACCACTGGCCTGATATCAGAGACCGATGTGGTACGTTTGAAAGAATTTAGAGGTGCAATTGACTTGATTTTTTCAACAAATTTGGCCGAGAAATGTTCGGTGAAAGCGAGTAGCCAACGTGGAGGCGAAAATGGTGGGTTCGGACCTGAAAACGTGCTAGACAATGAGCACTTGTGGACATATTGGGCTCCGAGTGATGAAAATGAGGATGACCACTGGATCGAGTTGAGGGCTAAGTCGAACAGAGGGCTGAGATTCAATGTGATCAGGATTCAAGAGGCGATTGGGCTAGGACAGAGGATCATATGGCACGAGATTTACGTCGGCGGGGCCGGGTCGCGAAGGGACCACAGTAGGGTACAAGAAGCTTCACAGGCTTGCCAAGGGAGAGGTCCATGGGAATGGCGTGAGGGTCCGAATCATGGGATCGAGAGGGGGGATTCCTTTAATATCATCCATTGGTCTGCATTTTGA

Network for GWHGAAZE019368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01120.18	Alpha_L_fucos	74	336	1.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01206	FUCA	Other glycan degradation	map00511
K01206	FUCA	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.888
	SRR3591706	second leaf	3.034
	SRR3591707	mature leaf	2.657
	SRR3591708	Shoot apex	2.526
	SRR3591709	Stem	0.883
	SRR3591710	White floral bud	2.812
	SRR3591711	White flower	0.651
	SRR3591712	Green floral bud	4.378
	SRR3591713	Yellow flower	0.205
SRP173429	SRR8316895	Juvenile bud stage	1.854
	SRR8316896	Juvenile bud stage	1.539
	SRR8316897	Juvenile bud stage	0.858
	SRR8316894	Third green stage	1.596
	SRR8316900	Third green stage	5.014
	SRR8316901	Third green stage	4.147
	SRR8316898	Complete white stage	0.668
	SRR8316899	Complete white stage	2.598
	SRR8316903	Complete white stage	0.630
	SRR8316902	Silver flowering stage	0.344
	SRR8316904	Silver flowering stage	0.878
	SRR8316905	Silver flowering stage	0.051
	SRR8316906	Gold flowering stage	0.476
	SRR8316907	Gold flowering stage	0.479
	SRR8316908	Gold flowering stage	0.316
SRP132670	SRR6706286	Control	6.933
	SRR6706287	Light intensity 50%	8.939
	SRR6706288	Light intensity 20%	8.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.986
	CNS0095593	Slightly white alabastrum(diploid) 2	4.598
	CNS0095594	Slightly white alabastrum(diploid) 3	2.588
	CNS0095595	Whole white alabastrum(diploid) 2	3.157
	CNS0095596	Whole white alabastrum(diploid) 3	5.338
	CNS0095597	Whole white alabastrum(diploid) 4	1.876
	CNS0095598	Silvery flower (diploied) 1	3.498
	CNS0095599	Silvery flower (diploied) 2	5.603
	CNS0095600	Silvery flower (diploied) 3	1.068
	CNS0095601	Golden flower (diploid) 1	2.644
	CNS0095602	Golden flower (diploid) 2	1.502
	CNS0095603	Golden flower (diploid) 3	1.180
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.324
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.033
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.125
	CNS0095610	Silvery flower (tetraploid) 1	0.775
	CNS0095611	Silvery flower (tetraploid) 2	2.254
	CNS0095612	Silvery flower (tetraploid) 3	0.893
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.194
	CNS0095615	Golden flower (tetraploid) 3	0.061
CRA001975	CRR073297	Stem 1	3.275
	CRR073298	Stem 2	4.617
	CRR073299	Stem 3	3.978
	CRR073300	Leaf 1	8.011
	CRR073301	Leaf 2	9.347
	CRR073302	Leaf 3	9.011
	CRR073303	Juvenile bud 1	5.880
	CRR073304	Juvenile bud 2	3.162
	CRR073305	Juvenile bud 3	3.351
	CRR073306	Third green 1	2.133
	CRR073307	Third green 2	3.957
	CRR073308	Third green 3	2.107
	CRR073309	Second white 1	0.804
	CRR073310	Second white 2	0.567
	CRR073311	Second white 3	0.581
	CRR073312	Silver flowering 1	0.231
	CRR073313	Silver flowering 2	0.007
	CRR073314	Silver flowering 3	0.140
	CRR073315	Gold flowering 1	1.669
	CRR073316	Gold flowering 2	2.198
	CRR073317	Gold flowering 3	2.956
	CRR073318	Tawny withering 1	1.132
	CRR073319	Tawny withering 2	0.870
	CRR073320	Tawny withering 3	0.231