Gene detail

Detail information of GWHGAAZE019375

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009784945.1	5.42E-178	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Nicotiana sylvestris]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	4E-122	Receptor-like protein 12 (Precursor)
trEMBL	tr\|M1A0L7\|M1A0L7_SOLTU	1E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400012034}
TAIR10	AT5G25910.1	1E-109	receptor like protein 52

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	39659510	39662242	+
GWHAAZE00000005	mRNA	39659510	39662242	+
GWHAAZE00000005	exon	39659510	39659533	+
GWHAAZE00000005	exon	39659894	39660803	+
GWHAAZE00000005	exon	39661245	39662242	+
GWHAAZE00000005	CDS	39659510	39659533	+
GWHAAZE00000005	CDS	39659894	39660803	+
GWHAAZE00000005	CDS	39661245	39662242	+

Transcript Sequence
>GWHTAAZE019397 ATGTTGCTACATAACTTAACCCAGCTCCGACACCTAAGCCATCTCGATCTTTATTCCAACAATTCCAACACTACCATTCCATCCTCGATTGGTAACCTAACCCAACTTGAATACTTGCACCTCTCATCAAATTCACTAATAGGCGCCATTCCGTCATCAATTGGTAACCTAATCCAACTTAAATACTTATCCCTTTCGTCTAATTCTCTAATAGGCCCCATTCCGTCATCAATTGGCAACCTAACCCAACTTAAAAGCTTAGACCTTCGGTCTAATTCTCTAACAGGCCCCATTCCGTCATTAATTAGCAACTTAACCCAACTTGAATACTTAAAACTTTGGTCTAATTCTCTAACAGGCCCCATTCCGTCATCAATTGGTAACCTAACCCAACTTAAAGCCTTATTCCTTTCGTTTAATTCTCTAACAGGCCCCATTCCGTCATCAATTGACAACCTAACCCAACTTAAAGCCTTATTCCTTTCGTCTAATTCTCTAACAGGCCCCATTCCGTCATCAATTAGTAATTTAACCCAACTTGAACACTTAGACTTCATGTCTAATTCTCTAATAGGCCTCATTCCGTCATCAATTGACAACCTAACCCAACTTGAATACTTATCCCTTTCGTCTAATTCTCTAACAGGCCCCATTCCGTCATCAATTGGCAACCTAACCCAACTTAAAAGCTTAGACCTTTGGTCTAATTCTCTAACAGGCCCCATTCCGTCATCAATTGGTAACCTAACCCAACTTAAAGCCTTATTCCTTTCGTCTAATTCTCTAACAGGCCCCATTCCGTCATCAATTGGCAACCTAACCCAACTTGAATATTTAGACCTTTCGTCTAATTCACTAACAGGCCCCATTCCGTATTCAATCACAAAGCTCAGGGCCCTACGAGATCTCACGCTTTCAAAAAATAGTATGATAGGAAAATTGCCGAGTTCTTTGGCTAATTGCAAACAGCTAGAAGTTCTCGATCTCGGAAACAACAACTTAAACGATACATTCCCGGCGTGGTTAGGAACTCTTCCAGAGTTGAAGGTTCTCATCTTTAAATCTAATAGATTCCATGGCTCAATACCCAATAGTGCACATATCAAGTCTCCTTTCAGCAAGCTGAAAATAATTGACCTCTCTAATAATGAGTTTTCAGGTCACCTTCCATTAAAATATTTCAGATATTTCAAGGCCATGATGGAGGTGCGAGGATATAATACTGAGCCAGAATATATGACCATTAAACAAGTTTTGTCAAACGATTACTTATATTCTGTCAAAGTGGTCGTGAAAGGGATGGAGCGTGAATTGGAGAAAATTATAACTACCTTCACAACCATTGATATGTCCAACAACAAATTCGAAGGTGAGATTCCGAATTACATCGAAAATCTCAGGTCATTAAGAGCTCTCAACTTATCCCATAATAAGCTTGTAGGTCATATTCCCCCATCGCTAGGGAAGCTTTCTATGCTTGAATCATTAGACCTTTCCTTTAACCAACTCAAAGGAGAGATTCCACAACAGTTAACAGGTCTAATATCGCTTGCATTCTTAAATCTCTCTCAAAATCATCTTGTGGGTTGTATACCAAAAGGCAAACAATTTAATACATTTGAAAATAATTCGTACAGTGGGAACTCAGCATTACGTGGGTTTCCGTTATCAAAAGATTGTGGAGGTGAAGATACGCCACATCAACGTTCGCCGACAAATCTTCAACAAGATGACGATTCAGATTTTAAGAGTGGATTTACATGGAAAGCCGTGTGTTTGGGATATGGTTGTGGAACTATACTTGGATTTGTTATGGGGTACTTAGTGTTCTTAACAGGAAAACCAAAATGGTTAGTTGGACTTGTGGAGGAATATCAATACAAGAATGGGATGAAGAGAGGTCATCAAAGGCGTGCCAGAAGAAGGAATTAA

Network for GWHGAAZE019375

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	39	94	2.20E-06
PF13855.7	LRR_8	107	166	2.70E-09
PF00560.34	LRR_1	179	201	0.42
PF00560.34	LRR_1	203	225	0.19
PF13855.7	LRR_8	227	286	3.70E-11
PF13855.7	LRR_8	299	357	1.50E-06
PF00560.34	LRR_1	468	490	0.34
PF13516.7	LRR_6	491	506	0.68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.109
	SRR3591706	second leaf	0.636
	SRR3591707	mature leaf	1.579
	SRR3591708	Shoot apex	0.259
	SRR3591709	Stem	0.790
	SRR3591710	White floral bud	0.034
	SRR3591711	White flower	0.281
	SRR3591712	Green floral bud	0.146
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.372
	SRR8316896	Juvenile bud stage	0.964
	SRR8316897	Juvenile bud stage	2.753
	SRR8316894	Third green stage	0.177
	SRR8316900	Third green stage	0.087
	SRR8316901	Third green stage	0.033
	SRR8316898	Complete white stage	0.074
	SRR8316899	Complete white stage	2.971
	SRR8316903	Complete white stage	0.773
	SRR8316902	Silver flowering stage	0.018
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.002
	SRR8316906	Gold flowering stage	0.971
	SRR8316907	Gold flowering stage	0.157
	SRR8316908	Gold flowering stage	8.641
SRP132670	SRR6706286	Control	0.724
	SRR6706287	Light intensity 50%	0.566
	SRR6706288	Light intensity 20%	0.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.349
	CNS0095593	Slightly white alabastrum(diploid) 2	0.165
	CNS0095594	Slightly white alabastrum(diploid) 3	0.796
	CNS0095595	Whole white alabastrum(diploid) 2	0.337
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.515
	CNS0095598	Silvery flower (diploied) 1	1.100
	CNS0095599	Silvery flower (diploied) 2	0.451
	CNS0095600	Silvery flower (diploied) 3	0.312
	CNS0095601	Golden flower (diploid) 1	1.908
	CNS0095602	Golden flower (diploid) 2	0.712
	CNS0095603	Golden flower (diploid) 3	0.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.327
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.887
	CNS0095610	Silvery flower (tetraploid) 1	4.084
	CNS0095611	Silvery flower (tetraploid) 2	5.048
	CNS0095612	Silvery flower (tetraploid) 3	5.785
	CNS0095613	Golden flower (tetraploid) 1	10.165
	CNS0095614	Golden flower (tetraploid) 2	3.628
	CNS0095615	Golden flower (tetraploid) 3	5.999
CRA001975	CRR073297	Stem 1	0.044
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.023
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.191
	CRR073316	Gold flowering 2	1.130
	CRR073317	Gold flowering 3	0.571
	CRR073318	Tawny withering 1	0.124
	CRR073319	Tawny withering 2	0.068
	CRR073320	Tawny withering 3	0.000