Detail information of GWHGAAZE019377


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010043052.13.47444E-14PREDICTED: uncharacterized protein LOC104432283 isoform X1 [Eucalyptus grandis]
trEMBLtr|A0A059D2W3|A0A059D2W3_EUCGR1E-14Uncharacterized protein {ECO:0000313|EMBL:KCW85073.1}
TAIR10AT2G47700.10.000000001RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3968318339683520-
GWHAAZE00000005mRNA3968318339683520-
GWHAAZE00000005exon3968318339683229-
GWHAAZE00000005exon3968339739683520-
GWHAAZE00000005CDS3968339739683520-
GWHAAZE00000005CDS3968318339683229-
Transcript Sequence

Network for GWHGAAZE019377

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_1115411.30E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.116
SRR3591706second leaf2.677
SRR3591707mature leaf2.873
SRR3591708Shoot apex7.275
SRR3591709Stem4.053
SRR3591710White floral bud7.266
SRR3591711White flower3.691
SRR3591712Green floral bud7.839
SRR3591713Yellow flower4.867
SRP173429 SRR8316895Juvenile bud stage 0.895
SRR8316896Juvenile bud stage 1.986
SRR8316897Juvenile bud stage 1.798
SRR8316894Third green stage 1.280
SRR8316900Third green stage 1.716
SRR8316901Third green stage 2.963
SRR8316898Complete white stage 1.614
SRR8316899Complete white stage 3.200
SRR8316903Complete white stage 4.174
SRR8316902Silver flowering stage1.631
SRR8316904Silver flowering stage2.143
SRR8316905Silver flowering stage2.457
SRR8316906Gold flowering stage 3.277
SRR8316907Gold flowering stage 2.967
SRR8316908Gold flowering stage 2.945
SRP132670SRR6706286Control7.046
SRR6706287Light intensity 50%4.031
SRR6706288Light intensity 20%8.904
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.269
CNS0095593Slightly white alabastrum(diploid) 24.661
CNS0095594Slightly white alabastrum(diploid) 33.435
CNS0095595Whole white alabastrum(diploid) 23.328
CNS0095596Whole white alabastrum(diploid) 32.325
CNS0095597Whole white alabastrum(diploid) 41.962
CNS0095598Silvery flower (diploied) 12.542
CNS0095599Silvery flower (diploied) 26.879
CNS0095600Silvery flower (diploied) 33.418
CNS0095601Golden flower (diploid) 13.370
CNS0095602Golden flower (diploid) 27.463
CNS0095603Golden flower (diploid) 35.453
CNS0095604Slightly white alabastrum(tetraploid) 11.691
CNS0095605Slightly white alabastrum(tetraploid) 22.176
CNS0095606Slightly white alabastrum(tetraploid) 30.903
CNS0095607Whole white alabastrum(tetraploid) 12.813
CNS0095608Whole white alabastrum(tetraploid) 21.571
CNS0095609Whole white alabastrum(tetraploid) 31.846
CNS0095610Silvery flower (tetraploid) 16.101
CNS0095611Silvery flower (tetraploid) 24.696
CNS0095612Silvery flower (tetraploid) 33.737
CNS0095613Golden flower (tetraploid) 11.640
CNS0095614Golden flower (tetraploid) 21.846
CNS0095615Golden flower (tetraploid) 31.902
CRA001975CRR073297Stem 19.212
CRR073298Stem 26.612
CRR073299Stem 39.138
CRR073300Leaf 13.975
CRR073301Leaf 23.682
CRR073302Leaf 35.743
CRR073303Juvenile bud 14.998
CRR073304Juvenile bud 23.367
CRR073305Juvenile bud 36.591
CRR073306Third green 19.111
CRR073307Third green 25.412
CRR073308Third green 37.849
CRR073309Second white 18.862
CRR073310Second white 29.758
CRR073311Second white 36.843
CRR073312Silver flowering 112.181
CRR073313Silver flowering 23.624
CRR073314Silver flowering 37.218
CRR073315Gold flowering 15.683
CRR073316Gold flowering 22.056
CRR073317Gold flowering 34.897
CRR073318Tawny withering 110.759
CRR073319Tawny withering 25.655
CRR073320Tawny withering 35.998