Detail information of GWHGAAZE019389


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17187.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V9L2|A0A068V9L2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313|EMBL:CDP17187.1}
TAIR10AT5G27730.11E-135Protein of unknown function (DUF1624)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene4036678040373646-
GWHAAZE00000005mRNA4036678040373646-
GWHAAZE00000005exon4036678040366835-
GWHAAZE00000005exon4036732740367474-
GWHAAZE00000005exon4036784140367932-
GWHAAZE00000005exon4036802540368106-
GWHAAZE00000005exon4036832940368395-
GWHAAZE00000005exon4036877240368863-
GWHAAZE00000005exon4036915240369268-
GWHAAZE00000005exon4036980540369922-
GWHAAZE00000005exon4037002640370141-
GWHAAZE00000005exon4037024240370318-
GWHAAZE00000005exon4037331540373396-
GWHAAZE00000005exon4037354240373646-
GWHAAZE00000005CDS4037354240373646-
GWHAAZE00000005CDS4037331540373396-
GWHAAZE00000005CDS4037024240370318-
GWHAAZE00000005CDS4037002640370141-
GWHAAZE00000005CDS4036980540369922-
GWHAAZE00000005CDS4036915240369268-
GWHAAZE00000005CDS4036877240368863-
GWHAAZE00000005CDS4036832940368395-
GWHAAZE00000005CDS4036802540368106-
GWHAAZE00000005CDS4036784140367932-
GWHAAZE00000005CDS4036732740367474-
GWHAAZE00000005CDS4036678040366835-
Transcript Sequence

Network for GWHGAAZE019389

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0174


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10532HGSNAT Metabolic pathways map01100
Glycosaminoglycan degradationmap00531
Lysosomemap04142

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.462
SRR3591706second leaf5.090
SRR3591707mature leaf10.606
SRR3591708Shoot apex4.072
SRR3591709Stem4.025
SRR3591710White floral bud3.142
SRR3591711White flower4.297
SRR3591712Green floral bud3.205
SRR3591713Yellow flower1.672
SRP173429 SRR8316895Juvenile bud stage 1.429
SRR8316896Juvenile bud stage 1.266
SRR8316897Juvenile bud stage 1.595
SRR8316894Third green stage 1.106
SRR8316900Third green stage 1.526
SRR8316901Third green stage 0.922
SRR8316898Complete white stage 0.177
SRR8316899Complete white stage 1.909
SRR8316903Complete white stage 0.374
SRR8316902Silver flowering stage0.356
SRR8316904Silver flowering stage0.209
SRR8316905Silver flowering stage0.178
SRR8316906Gold flowering stage 0.404
SRR8316907Gold flowering stage 0.561
SRR8316908Gold flowering stage 0.623
SRP132670SRR6706286Control1.051
SRR6706287Light intensity 50%0.857
SRR6706288Light intensity 20%0.928
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.375
CNS0095593Slightly white alabastrum(diploid) 21.595
CNS0095594Slightly white alabastrum(diploid) 31.415
CNS0095595Whole white alabastrum(diploid) 21.170
CNS0095596Whole white alabastrum(diploid) 31.062
CNS0095597Whole white alabastrum(diploid) 40.836
CNS0095598Silvery flower (diploied) 17.563
CNS0095599Silvery flower (diploied) 23.636
CNS0095600Silvery flower (diploied) 31.542
CNS0095601Golden flower (diploid) 17.382
CNS0095602Golden flower (diploid) 23.544
CNS0095603Golden flower (diploid) 34.176
CNS0095604Slightly white alabastrum(tetraploid) 11.723
CNS0095605Slightly white alabastrum(tetraploid) 21.661
CNS0095606Slightly white alabastrum(tetraploid) 32.744
CNS0095607Whole white alabastrum(tetraploid) 11.740
CNS0095608Whole white alabastrum(tetraploid) 20.590
CNS0095609Whole white alabastrum(tetraploid) 31.513
CNS0095610Silvery flower (tetraploid) 11.138
CNS0095611Silvery flower (tetraploid) 22.542
CNS0095612Silvery flower (tetraploid) 30.982
CNS0095613Golden flower (tetraploid) 10.546
CNS0095614Golden flower (tetraploid) 20.713
CNS0095615Golden flower (tetraploid) 30.077
CRA001975CRR073297Stem 11.670
CRR073298Stem 21.081
CRR073299Stem 31.256
CRR073300Leaf 10.473
CRR073301Leaf 20.761
CRR073302Leaf 30.725
CRR073303Juvenile bud 10.785
CRR073304Juvenile bud 20.102
CRR073305Juvenile bud 30.572
CRR073306Third green 10.037
CRR073307Third green 20.008
CRR073308Third green 30.127
CRR073309Second white 10.000
CRR073310Second white 20.535
CRR073311Second white 30.000
CRR073312Silver flowering 10.234
CRR073313Silver flowering 20.033
CRR073314Silver flowering 30.204
CRR073315Gold flowering 17.064
CRR073316Gold flowering 214.486
CRR073317Gold flowering 36.634
CRR073318Tawny withering 12.473
CRR073319Tawny withering 22.685
CRR073320Tawny withering 31.201