Gene detail

Detail information of GWHGAAZE019393

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009766156.1	0	PREDICTED: pectinesterase 2-like [Nicotiana sylvestris]
Swissprot	tr\|O04887\|PME2_CITSI	0	Pectinesterase 2 (Precursor)
trEMBL	tr\|F6I390\|F6I390_VITVI	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT2G45220.1	7E-148	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	40546962	40549526	+
GWHAAZE00000005	mRNA	40546962	40549526	+
GWHAAZE00000005	exon	40546962	40547838	+
GWHAAZE00000005	exon	40548838	40549526	+
GWHAAZE00000005	CDS	40546962	40547838	+
GWHAAZE00000005	CDS	40548838	40549526	+

Transcript Sequence
>GWHTAAZE019415 ATGGCTCTTCAACTTCTCACACCATTTCTCTTTCTCTCTCTCTTCCTCTTTCTCTCTCCTACCATTTTTGCTTACACACAACACGACATTAAATCATGGTGCACCCAAACACCACACCCGAAACCATGTGAGTACTTCTTGACCCAAAACCCTAACTATGGTCCGATCAAACAAAAAACCCGACTTCTTAAAAGCATCGCTAAAGCTAGCCCTAGACAGGGCTTTGAACGCAAATGTCAAGACCAAAACCCTTGGCTTGAAATGTCGAAACGAGCAAGAAAAAGCTGCTTGGGCAGATTGTTTAGAGCTCTACGAGGACACAGTCTCGAGGCTCAACAAAACCGCGGACCCTTTGACCAAGTGCTCTCATGCCGACTCGCAAACCTGGCTCAGCTCGGCCCTAACCAACCTCGAGACCTGTCGAGCCGGGTTCTTGGAGCTAGGGGGGTGGGTGATTACCTATTGCCCTTGATGTCCAACAATGTGTCCATGCTTATTAGCAACACTTTGGCAATGAACGAGGGCAACGGGTCGGATAATGGGTCGGGTCATAAAAATGGGTTCCCGAGTTGGGTCCGACCTGGTGACCGGAAACTTTTGCAGGCAGGTTCGCCAGCAGCTCAGGCAAACGTGGTGGTGGCTCAAGACGGGTCGGGGAATTATAAGACAGTGGGGGAGGCGGTGGCAGCGGCGGGGAGAAGGGCAGGGAGTGGGAGGTATGTGATATATATTAAGGCAGGGACTTACCGGGAGAATGTGGAGGTGGGTTCAAAGTTGAAGAATATTATGTTTTTGGGTGATGGTATTGGGAGGACTATTATAACCGGTAGTAAAAGTGTTGGTGGTGGCACCACCACCTTCAAATCGGCCACCGTTGCTGTCGTGGGAGACGGATTCATAGCCCGGGGCATAACATTCCGCAACACCGCGGGCCCACAGAACCACCAGGCCGTGGCCCTCCGGTCCGGCTCCGACCTCTCGGTATTTTACCAATGTTCCTTCGAAGGTTATCAAGACACTCTCTACGTTCACTCAGACCGCCAGTTTTATAAAAACTGTGATATTTACGGTACAGTCGACTTCATTTTTGGCAACGCTGCCGTAGTTTTCCAAAATTGCAATATTTACCCCCGCAATCCGCCCAACAAAACCAACACCATCACAGCCCAGGGCCGAACCGACGCAAATCAGAACACGGGTATTTCGATTCACAACTGTCGGGTCACCCCAGCCTCGGATCTCAGATCAAATCAAGGGTCCGTTAGGACTTATTTGGGTCGGCCCTGGAAGCAGTATTCGAGGGTGGTGTTTATGCAGACTAATATGGATAGTTTCATTGACCCGGCAGGTTGGTTGCCATGGAGTGGGAATTTTGCATTAAGTACTTTGTATTATGGGGAGTATATGAATACTGGTCCGGGTTCAGCTACAGGTAGAAGGGTGAAGTGGGGCGGGTACCGGGTTATAACGAGTGCGGCGGAGGCGGGGAGGTTTACAGTTGGGAGTTTTATTGCAGGGGGGTCTTGGTTGCCGGCTACCAATGTGCCATTTACTGCAGGGCTTTGA

Network for GWHGAAZE019393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	210	506	2.30E-143

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.106
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.172
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	2.444
	SRR3591712	Green floral bud	0.029
	SRR3591713	Yellow flower	207.009
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.043
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.010
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.035
	SRR8316898	Complete white stage	0.581
	SRR8316899	Complete white stage	0.067
	SRR8316903	Complete white stage	0.666
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	1.321
	SRR8316905	Silver flowering stage	0.494
	SRR8316906	Gold flowering stage	45.799
	SRR8316907	Gold flowering stage	79.042
	SRR8316908	Gold flowering stage	38.728
SRP132670	SRR6706286	Control	0.273
	SRR6706287	Light intensity 50%	0.022
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.171
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.062
	CNS0095595	Whole white alabastrum(diploid) 2	0.048
	CNS0095596	Whole white alabastrum(diploid) 3	0.171
	CNS0095597	Whole white alabastrum(diploid) 4	0.104
	CNS0095598	Silvery flower (diploied) 1	1.187
	CNS0095599	Silvery flower (diploied) 2	1.602
	CNS0095600	Silvery flower (diploied) 3	2.103
	CNS0095601	Golden flower (diploid) 1	5.127
	CNS0095602	Golden flower (diploid) 2	256.250
	CNS0095603	Golden flower (diploid) 3	261.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.204
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.264
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.198
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	8.675
	CNS0095611	Silvery flower (tetraploid) 2	16.890
	CNS0095612	Silvery flower (tetraploid) 3	14.096
	CNS0095613	Golden flower (tetraploid) 1	120.848
	CNS0095614	Golden flower (tetraploid) 2	69.081
	CNS0095615	Golden flower (tetraploid) 3	92.046
CRA001975	CRR073297	Stem 1	0.478
	CRR073298	Stem 2	0.351
	CRR073299	Stem 3	0.373
	CRR073300	Leaf 1	0.205
	CRR073301	Leaf 2	0.441
	CRR073302	Leaf 3	0.362
	CRR073303	Juvenile bud 1	0.382
	CRR073304	Juvenile bud 2	0.253
	CRR073305	Juvenile bud 3	0.451
	CRR073306	Third green 1	0.927
	CRR073307	Third green 2	0.350
	CRR073308	Third green 3	0.512
	CRR073309	Second white 1	31.146
	CRR073310	Second white 2	57.994
	CRR073311	Second white 3	66.668
	CRR073312	Silver flowering 1	1152.370
	CRR073313	Silver flowering 2	1957.222
	CRR073314	Silver flowering 3	2165.092
	CRR073315	Gold flowering 1	0.125
	CRR073316	Gold flowering 2	0.414
	CRR073317	Gold flowering 3	0.181
	CRR073318	Tawny withering 1	0.353
	CRR073319	Tawny withering 2	0.431
	CRR073320	Tawny withering 3	0.107