Gene detail

Detail information of GWHGAAZE019397

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17187.1	2.3087E-111	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V9L2\|A0A068V9L2_COFCA	9E-112	Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313\|EMBL:CDP17187.1}
TAIR10	AT5G27730.1	4E-68	Protein of unknown function (DUF1624)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	40861224	40864496	+
GWHAAZE00000005	mRNA	40861224	40864496	+
GWHAAZE00000005	exon	40861224	40861343	+
GWHAAZE00000005	exon	40862489	40862574	+
GWHAAZE00000005	exon	40862933	40863025	+
GWHAAZE00000005	exon	40863449	40863515	+
GWHAAZE00000005	exon	40863757	40863838	+
GWHAAZE00000005	exon	40863925	40863992	+
GWHAAZE00000005	exon	40864311	40864496	+
GWHAAZE00000005	CDS	40861224	40861343	+
GWHAAZE00000005	CDS	40862489	40862574	+
GWHAAZE00000005	CDS	40862933	40863025	+
GWHAAZE00000005	CDS	40863449	40863515	+
GWHAAZE00000005	CDS	40863757	40863838	+
GWHAAZE00000005	CDS	40863925	40863992	+
GWHAAZE00000005	CDS	40864311	40864496	+

Transcript Sequence
>GWHTAAZE019419 GTGCTGGGAGGAGCATGTGTTCTTATTGTGTACTTGGCTGTTATTTATGGAACTAATGTTCCGGATTGGCAATTTACCATTCACAATCCAGATAGTGCTGATTTTGGGAAAACTTTTACCGTAGCTTGTAACGTAAGAGGAAAACTGGATCCTCCTTGTAATGCTGTAGGCTATGTTGACAGAGAAATAATGGGAATCAATCACATGCTTGCACTACAAATTTGCCTTTATGAGGGGCCTTTTCGGAAGGATTCTCCATTGTGGTGTTGGGCACCTTTTGAACCCAAAGGAATTCTAAGTTCAATATCTGCCATCTTGTCTGCAATAATAGGAGTACATTTCGGGCATGTCCTTATATATATGAAGGATCATTCTTCTAGATTGAGGCATTGGGTTTTGACGGGTCTTCCTCTCTTTGGTTTTGGGATTACTCTTCATTTAACAAATGTGATACCTTTAAATAAACAGCTGTACACTTTGAGCTATGTTTGTGTAACCTTGGGAGCAGCAGCATTGGTTGATATTTGGAAATTGAAGTATCTGTTTCTGCCATTCGAATGGATTGGTATGAACGTGATGCTAGTTTATGTTATGGCAGCTGAAGGCAGCTTTGCTGGATTCATTAATGGGTGGTATTACGATAACCCTCATAATACACTGGTATGTTTTCATCTCATTTGTACCCGCTTCTGTCCCAAATAA

Network for GWHGAAZE019397

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10532	HGSNAT	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.424
	SRR3591706	second leaf	0.922
	SRR3591707	mature leaf	1.478
	SRR3591708	Shoot apex	1.282
	SRR3591709	Stem	0.361
	SRR3591710	White floral bud	0.402
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.093
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.030
	SRR8316896	Juvenile bud stage	0.216
	SRR8316897	Juvenile bud stage	0.307
	SRR8316894	Third green stage	0.020
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.109
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.136
SRP132670	SRR6706286	Control	0.016
	SRR6706287	Light intensity 50%	0.026
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.142
	CNS0095593	Slightly white alabastrum(diploid) 2	0.294
	CNS0095594	Slightly white alabastrum(diploid) 3	0.090
	CNS0095595	Whole white alabastrum(diploid) 2	0.026
	CNS0095596	Whole white alabastrum(diploid) 3	0.062
	CNS0095597	Whole white alabastrum(diploid) 4	0.217
	CNS0095598	Silvery flower (diploied) 1	0.047
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.027
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.146
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.320
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.136
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.113
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.022
	CNS0095612	Silvery flower (tetraploid) 3	0.032
	CNS0095613	Golden flower (tetraploid) 1	0.025
	CNS0095614	Golden flower (tetraploid) 2	0.069
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.049
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.053
	CRR073319	Tawny withering 2	0.140
	CRR073320	Tawny withering 3	0.000