Gene detail

Detail information of GWHGAAZE019401

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17187.1	1.7693E-139	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V9L2\|A0A068V9L2_COFCA	7E-140	Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313\|EMBL:CDP17187.1}
TAIR10	AT5G27730.1	1E-90	Protein of unknown function (DUF1624)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	41019197	41023869	+
GWHAAZE00000005	mRNA	41019197	41023869	+
GWHAAZE00000005	exon	41019197	41019271	+
GWHAAZE00000005	exon	41019373	41019488	+
GWHAAZE00000005	exon	41019590	41019753	+
GWHAAZE00000005	exon	41020853	41020934	+
GWHAAZE00000005	exon	41021293	41021385	+
GWHAAZE00000005	exon	41021817	41021883	+
GWHAAZE00000005	exon	41022124	41022205	+
GWHAAZE00000005	exon	41022293	41022360	+
GWHAAZE00000005	exon	41022677	41022839	+
GWHAAZE00000005	exon	41023724	41023869	+
GWHAAZE00000005	CDS	41019197	41019271	+
GWHAAZE00000005	CDS	41019373	41019488	+
GWHAAZE00000005	CDS	41019590	41019753	+
GWHAAZE00000005	CDS	41020853	41020934	+
GWHAAZE00000005	CDS	41021293	41021385	+
GWHAAZE00000005	CDS	41021817	41021883	+
GWHAAZE00000005	CDS	41022124	41022205	+
GWHAAZE00000005	CDS	41022293	41022360	+
GWHAAZE00000005	CDS	41022677	41022839	+
GWHAAZE00000005	CDS	41023724	41023869	+

Transcript Sequence
>GWHTAAZE019423 GGTTTCTCACATGCTCCTAACGAACTCACATATGGTGTCGACATAAATCAAATAAGGTGTAGTGGCATTCTCCATAGAATCGCACTTGCATATCTAGTGGTGGCATTGATAGAAATCACAACAAAAGATGCGCAAGCCAAGGATCTATCACCTGGCCATCTATCGATATTTAAGTTATATTGTCGGCACTGGGTGCTGGGAGGAGCATGTGTTCTTATTGTGTACTTGGCTGTTATTTATGGAACTAATGTTCCGGATTGGCAATTTACCATTCACAATCCAGATAGTGCTGATTTTGGGAAAACTTTTACCGTAAATTCTTTGTTCCCATATTTCATATTACTTACCCTTACCTCTTGTAACGTAAGAGGAAAACTGGATCCTCCTTGTAATGCTGTAGGCTATGTTGACAGAGAAATAATGGGAATCAATCACATGCTTGCACTACAAATTTGCCTTTATGAGGGGCCTTTTCGGAAGGATTCTCCATCGTGGTGTTGGGCACCTTTTGAACCCGAAGGAATTCTAAGTTCAATATCTGCCATTTTGTCTGCAATAATAGGAGTACATTTCGGGCATGTCCTTATATATATGAAGGATCATTCTTCTAGATTGAGGCATTGGGTTTTGACGGGTCTTCCTCTCTTTGGTTTTGGGATTACTCTTCATTTAACAAATGTGATACCTTTAAATAAACAGCTGTACACTTTGAGCTATGTTTGTGTAACCTTGGGAGCAGCAGCATTGGTTGATATTTGGAAATTGAAGTATCTGTTTCTGCCATTCGAATGGATTGGTATGAACGTGATGCTAGTTTATGTTATGGCAGCTGAAGGCAGCTTTGCTGGATTCATTAATGGGTGGTATTACGATAACCCTCATAATACACTGGTATGTTTTCATCTCATTTGTATATTGGATCCAAAAGCACATATTTATTGGAGTGTGGCATTCAAGAAGAGTTTGGACTCTACTCTATGTTATCTTTGCGGAGATACTTTTCTGGGGTTTAGTTGCAGGCATTCTGCATTATATCATATATACTGGAAGCCATAG

Network for GWHGAAZE019401

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10532	HGSNAT	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.599
	SRR3591706	second leaf	1.863
	SRR3591707	mature leaf	2.644
	SRR3591708	Shoot apex	2.546
	SRR3591709	Stem	1.460
	SRR3591710	White floral bud	0.235
	SRR3591711	White flower	0.220
	SRR3591712	Green floral bud	0.099
	SRR3591713	Yellow flower	0.029
SRP173429	SRR8316895	Juvenile bud stage	0.203
	SRR8316896	Juvenile bud stage	0.612
	SRR8316897	Juvenile bud stage	0.722
	SRR8316894	Third green stage	0.048
	SRR8316900	Third green stage	0.145
	SRR8316901	Third green stage	0.199
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.302
SRP132670	SRR6706286	Control	0.046
	SRR6706287	Light intensity 50%	0.053
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.529
	CNS0095593	Slightly white alabastrum(diploid) 2	0.377
	CNS0095594	Slightly white alabastrum(diploid) 3	0.599
	CNS0095595	Whole white alabastrum(diploid) 2	0.311
	CNS0095596	Whole white alabastrum(diploid) 3	0.611
	CNS0095597	Whole white alabastrum(diploid) 4	0.399
	CNS0095598	Silvery flower (diploied) 1	0.016
	CNS0095599	Silvery flower (diploied) 2	0.020
	CNS0095600	Silvery flower (diploied) 3	0.045
	CNS0095601	Golden flower (diploid) 1	0.070
	CNS0095602	Golden flower (diploid) 2	0.015
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.727
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.289
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.126
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.440
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.339
	CNS0095610	Silvery flower (tetraploid) 1	0.175
	CNS0095611	Silvery flower (tetraploid) 2	0.181
	CNS0095612	Silvery flower (tetraploid) 3	0.444
	CNS0095613	Golden flower (tetraploid) 1	0.117
	CNS0095614	Golden flower (tetraploid) 2	0.170
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.019
	CRR073298	Stem 2	0.058
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.032
	CRR073301	Leaf 2	0.082
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.013
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.168
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.043
	CRR073319	Tawny withering 2	0.093
	CRR073320	Tawny withering 3	0.000