Detail information of GWHGAAZE019449


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007050430.11.9076E-166Aldolase-type TIM barrel family protein [Theobroma cacao]
Swissprottr|O22765|TRPA1_ARATH1E-159Tryptophan synthase alpha chain
trEMBLtr|A0A061DQA0|A0A061DQA0_THECC7E-167Aldolase-type TIM barrel family protein {ECO:0000313|EMBL:EOX94587.1}
TAIR10AT4G02610.15E-121Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene4357252343579108-
GWHAAZE00000005mRNA4357252343579108-
GWHAAZE00000005exon4357252343572657-
GWHAAZE00000005exon4357301043573069-
GWHAAZE00000005exon4357340743573484-
GWHAAZE00000005exon4357357843573655-
GWHAAZE00000005exon4357431043574386-
GWHAAZE00000005exon4357497843575086-
GWHAAZE00000005exon4357585343575918-
GWHAAZE00000005exon4357599643576142-
GWHAAZE00000005exon4357902843579108-
GWHAAZE00000005CDS4357902843579108-
GWHAAZE00000005CDS4357599643576142-
GWHAAZE00000005CDS4357585343575918-
GWHAAZE00000005CDS4357497843575086-
GWHAAZE00000005CDS4357431043574386-
GWHAAZE00000005CDS4357357843573655-
GWHAAZE00000005CDS4357340743573484-
GWHAAZE00000005CDS4357301043573069-
GWHAAZE00000005CDS4357252343572657-
Transcript Sequence

Network for GWHGAAZE019449

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00290.21Trp_syntA192742.70E-95
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01695trpA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0006568biological_processtryptophan metabolic process
GO:0004834molecular_functiontryptophan synthase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.421
SRR3591706second leaf15.655
SRR3591707mature leaf19.146
SRR3591708Shoot apex50.263
SRR3591709Stem27.977
SRR3591710White floral bud270.530
SRR3591711White flower493.717
SRR3591712Green floral bud64.452
SRR3591713Yellow flower693.543
SRP173429 SRR8316895Juvenile bud stage 22.663
SRR8316896Juvenile bud stage 31.714
SRR8316897Juvenile bud stage 15.534
SRR8316894Third green stage 15.046
SRR8316900Third green stage 59.583
SRR8316901Third green stage 53.626
SRR8316898Complete white stage 52.945
SRR8316899Complete white stage 59.149
SRR8316903Complete white stage 68.606
SRR8316902Silver flowering stage68.572
SRR8316904Silver flowering stage78.931
SRR8316905Silver flowering stage38.236
SRR8316906Gold flowering stage 164.520
SRR8316907Gold flowering stage 148.525
SRR8316908Gold flowering stage 183.042
SRP132670SRR6706286Control46.281
SRR6706287Light intensity 50%51.550
SRR6706288Light intensity 20%50.825
CNP0000432CNS0095592Slightly white alabastrum(diploid) 142.225
CNS0095593Slightly white alabastrum(diploid) 249.473
CNS0095594Slightly white alabastrum(diploid) 340.019
CNS0095595Whole white alabastrum(diploid) 250.068
CNS0095596Whole white alabastrum(diploid) 346.676
CNS0095597Whole white alabastrum(diploid) 440.811
CNS0095598Silvery flower (diploied) 148.122
CNS0095599Silvery flower (diploied) 255.493
CNS0095600Silvery flower (diploied) 3109.147
CNS0095601Golden flower (diploid) 156.554
CNS0095602Golden flower (diploid) 294.271
CNS0095603Golden flower (diploid) 387.559
CNS0095604Slightly white alabastrum(tetraploid) 159.995
CNS0095605Slightly white alabastrum(tetraploid) 255.613
CNS0095606Slightly white alabastrum(tetraploid) 378.672
CNS0095607Whole white alabastrum(tetraploid) 141.907
CNS0095608Whole white alabastrum(tetraploid) 233.822
CNS0095609Whole white alabastrum(tetraploid) 371.685
CNS0095610Silvery flower (tetraploid) 1153.953
CNS0095611Silvery flower (tetraploid) 2156.352
CNS0095612Silvery flower (tetraploid) 3208.162
CNS0095613Golden flower (tetraploid) 1150.502
CNS0095614Golden flower (tetraploid) 2184.396
CNS0095615Golden flower (tetraploid) 3160.963
CRA001975CRR073297Stem 142.050
CRR073298Stem 244.857
CRR073299Stem 353.051
CRR073300Leaf 178.710
CRR073301Leaf 269.731
CRR073302Leaf 383.535
CRR073303Juvenile bud 1105.267
CRR073304Juvenile bud 2114.770
CRR073305Juvenile bud 3110.200
CRR073306Third green 1130.808
CRR073307Third green 275.772
CRR073308Third green 394.361
CRR073309Second white 1174.575
CRR073310Second white 2132.229
CRR073311Second white 3142.162
CRR073312Silver flowering 1138.930
CRR073313Silver flowering 2168.065
CRR073314Silver flowering 3129.420
CRR073315Gold flowering 121.184
CRR073316Gold flowering 232.322
CRR073317Gold flowering 324.840
CRR073318Tawny withering 139.164
CRR073319Tawny withering 230.903
CRR073320Tawny withering 340.861