Gene detail

Detail information of GWHGAAZE019543

Functional Annotation

Database	Orthologs	Annotation
Nr	ABW75772.2	lipoxygenase [Camellia sinensis]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|A8W7J7\|A8W7J7_CAMSI	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G55020.1	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	50431823	50440039	+
GWHAAZE00000005	mRNA	50431823	50440039	+
GWHAAZE00000005	exon	50431823	50432015	+
GWHAAZE00000005	exon	50435359	50435648	+
GWHAAZE00000005	exon	50436162	50436406	+
GWHAAZE00000005	exon	50436932	50437293	+
GWHAAZE00000005	exon	50437547	50437632	+
GWHAAZE00000005	exon	50437827	50437934	+
GWHAAZE00000005	exon	50438268	50438452	+
GWHAAZE00000005	exon	50438548	50438811	+
GWHAAZE00000005	exon	50439286	50440039	+
GWHAAZE00000005	CDS	50431823	50432015	+
GWHAAZE00000005	CDS	50435359	50435648	+
GWHAAZE00000005	CDS	50436162	50436406	+
GWHAAZE00000005	CDS	50436932	50437293	+
GWHAAZE00000005	CDS	50437547	50437632	+
GWHAAZE00000005	CDS	50437827	50437934	+
GWHAAZE00000005	CDS	50438268	50438452	+
GWHAAZE00000005	CDS	50438548	50438811	+
GWHAAZE00000005	CDS	50439286	50440039	+

Transcript Sequence
>GWHTAAZE019565 ATGTTTCATAATATTGTGGAGGCTATTTCAGGAGGAAATGAGAGCAAAAGGAAGGTTAAAGGGAGGGTTGTGTTGATGAAGAAGAATGTATTGGATTTTAATGACATTGGAGCTTCTATTCTTGATAGAGTTCATGAATTCTTAGGCCAAAGAGTCTCTCTTCAGCTTATCAGTTCTGTCCATGGTGATCCAGAGAAAGAGTTGGGAGGAAAAATTGGAAGTCCAGCATACTTGGAAGATTGGATTACGACAATTGCCCCTCTAACTCCTGGTGACACTGGTTACAATGTCACATTTGATTGGGAAGAGAAGATAGGATTTCCAGGGGCATTTTCGGTAAAAAATCTTCATCACAGTGAGTTTTATCTCAAGACACTCACACTTGAAGATGTTCCTGGCCATGGCCGTGTCCATTTTGTTTGTAATTCTTGGGTTTATCCGGCTGACAAATACGAAACCGACCGTATTTTCTTCGTAAATCAGGCATATTTACCTAGTGAAACACCAGCACCTATGAAAAAGTATAGAGAACAAGAGCTAGTTAAGTTGAGAGGAACTGGCACTGGAATGCTGGAGGAATGGGACAGGGTTTACGACTACGCGTATTACAATGATTTAGGAGATCCCGATAAAGGCCCTGAAACCGCACGCCCAGTTCTTGGTGGGTCATCTGAGTACCCGTATCCTCGCAGGGGTAGAACAGGCCGGGAACCAACAAAAACAGGCAAATTTTTTGCCTTTCTGACAGATCCTAAAACAGAGAGTAGATTGCCACTTCTTATGAGCTTAAATATTTATGTCCCAAGAGATGAACGATTCGGGCACTTGAAGTTGTCTGATTTCCTTGCTAACGCTCTAAAATCTATCGTTCAATTCCTTCTACCGGAGTTTGAGGCTTTATGTGATCAAACCCCTGATGAGTTCGACACTTTCCAAGACGTGCTAAATCTTTATGAAGGTGGAATCAAGCTACCAGATGGCCCTTTGCTCGACAAAATCAGAGAAAACATCCCCTTGGAAATGCTCAAGCAACTCGTTCAAACAGATGGTGAAGGACTCGCCAAATTCCCCATGCCACAAGTAATCAAAGATGATAAGTCCGCATGGAGGACAGACGAAGAATTCGCCAGGGAAATGTTAGCTGGAGTTAACCCCGTCAGTATCCAACGTCTAAAGGAGTTTCCTCCAACAAGCAATCTTGATCCTAAAGTCTATGGAAACCAAAACAGTTCAATAACCAAAAATCACATAAAGAATAACCTTGATGGGCTAACAATAGAAGAGAAAGACGGGACACTGAAGCCATTAGTGATTGAACTAAGCTTGCCAAATCCACAAGGGGATAAATTCGGTGCCGTTAGCAAAGTATTTACACCAGTTGAAAATGGCGTCGAAGGTACTATTTGGCAGTTGGCTAAAGCTTATGTTGCAGTGAATGACTCGGGTGTTCATCAGCTCGTCAGCCACTGGTTGAACACGCATGCGGTTATCGAGCCATTTGTGATTGCAACTAATAGGCAACTAAGTGTTCTTCACCCAATTTATAAGCTTCTTCAACCACATTTTCGTGACACAATGAACATAAATGCGGTCGCGAGGCAGATTCTCATCAATGGAGGAGGAATTCTTGAGAAAACTGTTTTTCCCGGAAAATATTCCATGGAATTGTCATCCGTGGTTTACAAAAATTGGGTTTTTCCTGACCAAGCACTCCCTACAGATCTCATCAAAAGGGGAATGGCAGTAGAGGACCTGAATTCTCCCCAAGGCCTTCGGCTACTAATCAAGGACTACCCATATGCCGTTGACGGGCTAAAAATCTGGTTTGCCATTGAGAACTGGGTCAACGACTATTGCAATTTTTACTACAAGACTGATCATATAGTTCAAAATGACCCTGAGCTCCAGTCTTGGTGGAAGGAACTTAGAGAAGTGGGCCACGGTGACAAAAAAGACGAGCCATGGTGGCCAAAAATGCAAACTAAGAAAGAATTAGTCGATTCGTGCACTACGATCATATGGGTAGCTAGTGCCCTCCACGCAGCAGTCAATTTTGGGCAATACCCTTATGCAGGGTACCTCCCGAACCGCCCTACCCTAAGTCGTAGGTTCATGCCCGAACCGGGCAGCCCTGAGTTTGCGGAACTCAAGACTAACCCCGAAAAGGCCTACTTGAAAACTATCACTCCCCAACTTCAAACATTGCTTGGGGTGGCGCTTATAGAGATTCTGTCAAGGCACCCCTCGGACGAGGTGTACCTCGGGAAAAGGGACACACCCGAATGGACTAAGGACGCAGCGCCCTTGGATGCATTTGGCCGATTCGGAGATAGGCTTGGAGAAATTGAGGAAGAAATTGTTGGAATGAACAAAGATGGTAAATGGAAGAATAGAGTTGGGCCTGTCAATGTGGAGTACACTTTGCTTTATCCTACAAGTGAAGTTGGTCTTACTGGCAAAGGGATTCCCAATAGTGTGTCTCTTTAG

Network for GWHGAAZE019543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	59	158	8.20E-16
PF00305.20	Lipoxygenase	172	428	4.60E-91
PF00305.20	Lipoxygenase	428	811	2.00E-196

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0005515	molecular_function	protein binding
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.143
	SRR3591706	second leaf	2.709
	SRR3591707	mature leaf	2.141
	SRR3591708	Shoot apex	5.576
	SRR3591709	Stem	2.345
	SRR3591710	White floral bud	5.088
	SRR3591711	White flower	16.148
	SRR3591712	Green floral bud	2.714
	SRR3591713	Yellow flower	74.065
SRP173429	SRR8316895	Juvenile bud stage	5.614
	SRR8316896	Juvenile bud stage	6.380
	SRR8316897	Juvenile bud stage	2.035
	SRR8316894	Third green stage	3.442
	SRR8316900	Third green stage	7.191
	SRR8316901	Third green stage	6.956
	SRR8316898	Complete white stage	1.179
	SRR8316899	Complete white stage	8.702
	SRR8316903	Complete white stage	2.214
	SRR8316902	Silver flowering stage	1.336
	SRR8316904	Silver flowering stage	2.852
	SRR8316905	Silver flowering stage	0.885
	SRR8316906	Gold flowering stage	11.457
	SRR8316907	Gold flowering stage	8.551
	SRR8316908	Gold flowering stage	18.327
SRP132670	SRR6706286	Control	5.320
	SRR6706287	Light intensity 50%	5.806
	SRR6706288	Light intensity 20%	5.530
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.135
	CNS0095593	Slightly white alabastrum(diploid) 2	5.684
	CNS0095594	Slightly white alabastrum(diploid) 3	4.317
	CNS0095595	Whole white alabastrum(diploid) 2	3.937
	CNS0095596	Whole white alabastrum(diploid) 3	2.098
	CNS0095597	Whole white alabastrum(diploid) 4	2.271
	CNS0095598	Silvery flower (diploied) 1	5.566
	CNS0095599	Silvery flower (diploied) 2	4.113
	CNS0095600	Silvery flower (diploied) 3	4.399
	CNS0095601	Golden flower (diploid) 1	7.089
	CNS0095602	Golden flower (diploid) 2	10.105
	CNS0095603	Golden flower (diploid) 3	10.324
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.782
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.065
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.233
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.951
	CNS0095610	Silvery flower (tetraploid) 1	2.773
	CNS0095611	Silvery flower (tetraploid) 2	2.570
	CNS0095612	Silvery flower (tetraploid) 3	6.263
	CNS0095613	Golden flower (tetraploid) 1	23.457
	CNS0095614	Golden flower (tetraploid) 2	5.766
	CNS0095615	Golden flower (tetraploid) 3	6.690
CRA001975	CRR073297	Stem 1	7.705
	CRR073298	Stem 2	6.699
	CRR073299	Stem 3	6.317
	CRR073300	Leaf 1	9.909
	CRR073301	Leaf 2	9.033
	CRR073302	Leaf 3	6.324
	CRR073303	Juvenile bud 1	5.954
	CRR073304	Juvenile bud 2	3.222
	CRR073305	Juvenile bud 3	7.176
	CRR073306	Third green 1	1.760
	CRR073307	Third green 2	1.975
	CRR073308	Third green 3	2.051
	CRR073309	Second white 1	2.706
	CRR073310	Second white 2	4.965
	CRR073311	Second white 3	2.023
	CRR073312	Silver flowering 1	21.095
	CRR073313	Silver flowering 2	12.723
	CRR073314	Silver flowering 3	23.204
	CRR073315	Gold flowering 1	2.704
	CRR073316	Gold flowering 2	2.522
	CRR073317	Gold flowering 3	2.245
	CRR073318	Tawny withering 1	18.299
	CRR073319	Tawny withering 2	16.679
	CRR073320	Tawny withering 3	5.753