Detail information of GWHGAAZE019621


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP20120.13.53539E-25unnamed protein product [Coffea canephora]
Swissprottr|Q9FR37|AMI1_ARATH7E-20Amidase 1
trEMBLtr|A0A068VH28|A0A068VH28_COFCA1E-25Coffea canephora DH200=94 genomic scaffold, scaffold_919 {ECO:0000313|EMBL:CDP20120.1}
TAIR10AT1G08980.11E-17amidase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5527053155272029-
GWHAAZE00000005mRNA5527053155272029-
GWHAAZE00000005exon5527053155270598-
GWHAAZE00000005exon5527111755271346-
GWHAAZE00000005exon5527195655272029-
GWHAAZE00000005CDS5527195655272029-
GWHAAZE00000005CDS5527111755271346-
GWHAAZE00000005CDS5527053155270598-
Transcript Sequence

Network for GWHGAAZE019621

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01426E3.5.1.4, amiE Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Arginine and proline metabolismmap00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.253
SRR3591706second leaf0.879
SRR3591707mature leaf0.646
SRR3591708Shoot apex0.966
SRR3591709Stem0.960
SRR3591710White floral bud1.703
SRR3591711White flower2.938
SRR3591712Green floral bud2.039
SRR3591713Yellow flower2.831
SRP173429 SRR8316895Juvenile bud stage 3.315
SRR8316896Juvenile bud stage 3.284
SRR8316897Juvenile bud stage 6.178
SRR8316894Third green stage 1.688
SRR8316900Third green stage 3.420
SRR8316901Third green stage 3.851
SRR8316898Complete white stage 2.353
SRR8316899Complete white stage 5.774
SRR8316903Complete white stage 2.945
SRR8316902Silver flowering stage1.192
SRR8316904Silver flowering stage2.396
SRR8316905Silver flowering stage1.258
SRR8316906Gold flowering stage 5.672
SRR8316907Gold flowering stage 2.830
SRR8316908Gold flowering stage 7.565
SRP132670SRR6706286Control11.431
SRR6706287Light intensity 50%11.483
SRR6706288Light intensity 20%13.239
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.389
CNS0095593Slightly white alabastrum(diploid) 22.955
CNS0095594Slightly white alabastrum(diploid) 31.170
CNS0095595Whole white alabastrum(diploid) 22.082
CNS0095596Whole white alabastrum(diploid) 30.242
CNS0095597Whole white alabastrum(diploid) 42.412
CNS0095598Silvery flower (diploied) 16.019
CNS0095599Silvery flower (diploied) 23.832
CNS0095600Silvery flower (diploied) 34.668
CNS0095601Golden flower (diploid) 15.756
CNS0095602Golden flower (diploid) 24.721
CNS0095603Golden flower (diploid) 35.958
CNS0095604Slightly white alabastrum(tetraploid) 13.847
CNS0095605Slightly white alabastrum(tetraploid) 24.394
CNS0095606Slightly white alabastrum(tetraploid) 312.805
CNS0095607Whole white alabastrum(tetraploid) 13.747
CNS0095608Whole white alabastrum(tetraploid) 21.526
CNS0095609Whole white alabastrum(tetraploid) 37.252
CNS0095610Silvery flower (tetraploid) 113.315
CNS0095611Silvery flower (tetraploid) 212.243
CNS0095612Silvery flower (tetraploid) 311.460
CNS0095613Golden flower (tetraploid) 17.574
CNS0095614Golden flower (tetraploid) 213.533
CNS0095615Golden flower (tetraploid) 313.639
CRA001975CRR073297Stem 113.093
CRR073298Stem 210.151
CRR073299Stem 311.253
CRR073300Leaf 16.596
CRR073301Leaf 29.851
CRR073302Leaf 37.274
CRR073303Juvenile bud 14.318
CRR073304Juvenile bud 26.411
CRR073305Juvenile bud 36.026
CRR073306Third green 15.104
CRR073307Third green 23.925
CRR073308Third green 33.732
CRR073309Second white 14.272
CRR073310Second white 25.400
CRR073311Second white 33.702
CRR073312Silver flowering 12.734
CRR073313Silver flowering 21.976
CRR073314Silver flowering 35.024
CRR073315Gold flowering 115.566
CRR073316Gold flowering 222.740
CRR073317Gold flowering 317.665
CRR073318Tawny withering 17.574
CRR073319Tawny withering 27.927
CRR073320Tawny withering 36.110