Detail information of GWHGAAZE019625


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGZ15315.12.69409E-40mevalonate kinase [Platycodon grandiflorus]
Swissprottr|P46086|KIME_ARATH8E-30Mevalonate kinase
trEMBLtr|V9PEX2|V9PEX2_9ASTR1E-40Mevalonate kinase {ECO:0000313|EMBL:AGZ15315.1}
TAIR10AT5G27450.31E-20mevalonate kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5557224455575079-
GWHAAZE00000005mRNA5557224455575079-
GWHAAZE00000005exon5557493755575079-
GWHAAZE00000005exon5557476655574770-
GWHAAZE00000005exon5557281755573110-
GWHAAZE00000005exon5557224455572320-
GWHAAZE00000005CDS5557493755575079-
GWHAAZE00000005CDS5557476655574770-
GWHAAZE00000005CDS5557281755573110-
GWHAAZE00000005CDS5557224455572320-
Transcript Sequence

Network for GWHGAAZE019625

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00869E2.7.1.36, MVK, mvaK1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
Peroxisomemap04146

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.470
SRR3591706second leaf0.964
SRR3591707mature leaf0.384
SRR3591708Shoot apex1.747
SRR3591709Stem1.918
SRR3591710White floral bud1.049
SRR3591711White flower0.646
SRR3591712Green floral bud1.408
SRR3591713Yellow flower1.345
SRP173429 SRR8316895Juvenile bud stage 1.738
SRR8316896Juvenile bud stage 1.563
SRR8316897Juvenile bud stage 2.787
SRR8316894Third green stage 0.629
SRR8316900Third green stage 2.256
SRR8316901Third green stage 3.133
SRR8316898Complete white stage 0.182
SRR8316899Complete white stage 1.458
SRR8316903Complete white stage 0.698
SRR8316902Silver flowering stage0.257
SRR8316904Silver flowering stage0.123
SRR8316905Silver flowering stage0.109
SRR8316906Gold flowering stage 0.291
SRR8316907Gold flowering stage 0.350
SRR8316908Gold flowering stage 1.079
SRP132670SRR6706286Control1.881
SRR6706287Light intensity 50%1.843
SRR6706288Light intensity 20%1.627
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.098
CNS0095593Slightly white alabastrum(diploid) 22.620
CNS0095594Slightly white alabastrum(diploid) 32.530
CNS0095595Whole white alabastrum(diploid) 23.566
CNS0095596Whole white alabastrum(diploid) 33.016
CNS0095597Whole white alabastrum(diploid) 43.356
CNS0095598Silvery flower (diploied) 10.631
CNS0095599Silvery flower (diploied) 21.602
CNS0095600Silvery flower (diploied) 30.584
CNS0095601Golden flower (diploid) 10.421
CNS0095602Golden flower (diploid) 21.428
CNS0095603Golden flower (diploid) 31.031
CNS0095604Slightly white alabastrum(tetraploid) 10.431
CNS0095605Slightly white alabastrum(tetraploid) 20.140
CNS0095606Slightly white alabastrum(tetraploid) 30.295
CNS0095607Whole white alabastrum(tetraploid) 10.037
CNS0095608Whole white alabastrum(tetraploid) 20.558
CNS0095609Whole white alabastrum(tetraploid) 30.403
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.047
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.078
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.798
CRR073298Stem 21.802
CRR073299Stem 31.191
CRR073300Leaf 12.455
CRR073301Leaf 22.398
CRR073302Leaf 31.757
CRR073303Juvenile bud 10.970
CRR073304Juvenile bud 20.259
CRR073305Juvenile bud 30.702
CRR073306Third green 10.000
CRR073307Third green 20.334
CRR073308Third green 30.511
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.126
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.109
CRR073318Tawny withering 11.552
CRR073319Tawny withering 20.828
CRR073320Tawny withering 31.142