Detail information of GWHGAAZE019654


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006375768.11.11516E-62hypothetical protein POPTR_0013s025002g, partial [Populus trichocarpa]
Swissprottr|Q9FR37|AMI1_ARATH8E-49Amidase 1
trEMBLtr|U5FRE0|U5FRE0_POPTR4E-63Uncharacterized protein {ECO:0000313|EMBL:ERP53565.1} (Fragment)
TAIR10AT1G08980.12E-41amidase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5661439456617103-
GWHAAZE00000005mRNA5661439456617103-
GWHAAZE00000005exon5661702456617103-
GWHAAZE00000005exon5661678356616861-
GWHAAZE00000005exon5661611056616244-
GWHAAZE00000005exon5661510956615232-
GWHAAZE00000005exon5661439456614407-
GWHAAZE00000005CDS5661702456617103-
GWHAAZE00000005CDS5661678356616861-
GWHAAZE00000005CDS5661611056616244-
GWHAAZE00000005CDS5661510956615232-
GWHAAZE00000005CDS5661439456614407-
Transcript Sequence

Network for GWHGAAZE019654

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01426E3.5.1.4, amiE Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Arginine and proline metabolismmap00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.730
SRR3591706second leaf0.719
SRR3591707mature leaf1.641
SRR3591708Shoot apex1.663
SRR3591709Stem2.895
SRR3591710White floral bud0.214
SRR3591711White flower0.462
SRR3591712Green floral bud0.202
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.121
SRR8316896Juvenile bud stage 2.106
SRR8316897Juvenile bud stage 0.739
SRR8316894Third green stage 0.825
SRR8316900Third green stage 1.594
SRR8316901Third green stage 1.196
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.746
SRR8316903Complete white stage 0.329
SRR8316902Silver flowering stage0.259
SRR8316904Silver flowering stage0.006
SRR8316905Silver flowering stage0.090
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.396
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.899
SRR6706287Light intensity 50%1.095
SRR6706288Light intensity 20%1.915
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.593
CNS0095593Slightly white alabastrum(diploid) 23.678
CNS0095594Slightly white alabastrum(diploid) 32.411
CNS0095595Whole white alabastrum(diploid) 22.127
CNS0095596Whole white alabastrum(diploid) 32.946
CNS0095597Whole white alabastrum(diploid) 41.700
CNS0095598Silvery flower (diploied) 13.886
CNS0095599Silvery flower (diploied) 22.907
CNS0095600Silvery flower (diploied) 30.446
CNS0095601Golden flower (diploid) 11.496
CNS0095602Golden flower (diploid) 20.430
CNS0095603Golden flower (diploid) 30.424
CNS0095604Slightly white alabastrum(tetraploid) 11.195
CNS0095605Slightly white alabastrum(tetraploid) 20.733
CNS0095606Slightly white alabastrum(tetraploid) 30.904
CNS0095607Whole white alabastrum(tetraploid) 10.619
CNS0095608Whole white alabastrum(tetraploid) 20.164
CNS0095609Whole white alabastrum(tetraploid) 30.956
CNS0095610Silvery flower (tetraploid) 10.345
CNS0095611Silvery flower (tetraploid) 20.390
CNS0095612Silvery flower (tetraploid) 30.092
CNS0095613Golden flower (tetraploid) 10.107
CNS0095614Golden flower (tetraploid) 20.258
CNS0095615Golden flower (tetraploid) 30.001
CRA001975CRR073297Stem 11.582
CRR073298Stem 21.158
CRR073299Stem 30.130
CRR073300Leaf 12.062
CRR073301Leaf 21.422
CRR073302Leaf 30.176
CRR073303Juvenile bud 10.144
CRR073304Juvenile bud 20.304
CRR073305Juvenile bud 30.261
CRR073306Third green 10.000
CRR073307Third green 20.081
CRR073308Third green 30.006
CRR073309Second white 10.000
CRR073310Second white 20.029
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.220
CRR073316Gold flowering 20.431
CRR073317Gold flowering 30.035
CRR073318Tawny withering 11.026
CRR073319Tawny withering 21.140
CRR073320Tawny withering 30.544