Gene detail

Detail information of GWHGAAZE019663

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002513467.1	1.59314E-61	ubiquitin-protein ligase, putative [Ricinus communis]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	6E-14	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|B9RI98\|B9RI98_RICCO	6E-62	Ubiquitin-protein ligase, putative {ECO:0000313\|EMBL:EEF48870.1}
TAIR10	AT1G16930.1	3E-10	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	56958238	56960276	+
GWHAAZE00000005	mRNA	56958238	56960276	+
GWHAAZE00000005	exon	56958238	56958803	+
GWHAAZE00000005	exon	56958966	56959128	+
GWHAAZE00000005	exon	56959238	56959387	+
GWHAAZE00000005	exon	56959977	56960276	+
GWHAAZE00000005	CDS	56958238	56958803	+
GWHAAZE00000005	CDS	56958966	56959128	+
GWHAAZE00000005	CDS	56959238	56959387	+
GWHAAZE00000005	CDS	56959977	56960276	+

Transcript Sequence
>GWHTAAZE019685 TGCAGCACAAGCAGAAATATTCTTTTGGCAGATCGGATTAGCAGGTTGCCAGATGACATTCTTACGACTATTCTGTCGCACTTGACGATGAAAGAAGCAGCAAGTACCACCGTTCTCTCTCATAGATGGAACAACTTATGGATGCACACCACTGGTTGCTTGGACTTTGATGATTCAAGAACTTTAACTTTTTGGACTATTAAGCTTTACATATCGAGTCGTTTTAGGGAACCGGATCTTGTAGAAGAGGGGCCCTTGCTTGAAGAAGATAGGGTCCTGTTTGTTGGATGGGTAAATCGGATTTTGAAGTCGCATAAGGGTGCCACAATCGACGGATTTAGAGTCCATTTTGATTTGGATTCAAGTTCTAGATCAGATATTGATAGCTGGATTAACTTTGCATTGCAAAAGAGAGCAAGGAGACTTGAACTGGACTTGGACCGATTGTTTAAACCTTGGGAGGGCATCTACCCTTTTCCAGAAAAATCTGTGATTGGCCATCCAACCATCAATTCCCTGACCTATCTCAAGTTGAACTATGTAGACGTGACTCGGGAACTACTTGAGACGTTGAAATACTTTGGACCAGAAGCAAGCCTTTGTTTCAAGAATGCTCCAAATCTTATTGATGTATCATTCGGGGGAGCCTTTTGTAAAGACATTGCTCAGAAATTCCATAGGCATTCCATCTCTCAGATAGAGAAACTTAAGTTGAACATGAGTTGTTATATTTTCGAGACCTATGACAGATTCCCTATATTAAAAAATCTCAAGCAATTGGAATTGGTATTGGTATTGAAGGGATGGGATCCGCACGGTGTCCTTCACTATGTAACACTCCTTGAGAAATGCCCAATGTTGTATAGACTTTGCGTGCAGTTCAATTGGTTCGAGGACCCAAAAGAAATAGAGATCCAGGAGAGAGAGTGTAGGCTCGAATGTCTCAAGTTTATTGAAATGTCTGCATTTCGTGGGAGTAGAACTGATCTGGAACTGGCAACGTTTCTGATTAAAAATTCTCCATGTCTTGAGAAGATTACTATTGATACTCGCGATCCTCCTAGTTACTCAGGAACCTTGTGGGAAGCACTCCAGAAAGATAGCGTGGCCGCCCAGGAGTCCGCAACACAGCTGCTGTCGACTAAACTATCTCCGGGTGTTGAATACCTTGTACTTTGA

Network for GWHGAAZE019663

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	12	47	5.00E-05
PF08387.11	FBD	309	348	2.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.047
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.135
	SRR3591708	Shoot apex	0.128
	SRR3591709	Stem	0.553
	SRR3591710	White floral bud	1.630
	SRR3591711	White flower	1.405
	SRR3591712	Green floral bud	1.451
	SRR3591713	Yellow flower	1.248
SRP173429	SRR8316895	Juvenile bud stage	0.138
	SRR8316896	Juvenile bud stage	0.773
	SRR8316897	Juvenile bud stage	0.302
	SRR8316894	Third green stage	0.118
	SRR8316900	Third green stage	0.148
	SRR8316901	Third green stage	0.645
	SRR8316898	Complete white stage	0.428
	SRR8316899	Complete white stage	0.131
	SRR8316903	Complete white stage	0.042
	SRR8316902	Silver flowering stage	0.277
	SRR8316904	Silver flowering stage	0.245
	SRR8316905	Silver flowering stage	0.168
	SRR8316906	Gold flowering stage	0.103
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.128
SRP132670	SRR6706286	Control	0.035
	SRR6706287	Light intensity 50%	0.103
	SRR6706288	Light intensity 20%	0.024
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.904
	CNS0095593	Slightly white alabastrum(diploid) 2	0.531
	CNS0095594	Slightly white alabastrum(diploid) 3	1.181
	CNS0095595	Whole white alabastrum(diploid) 2	0.368
	CNS0095596	Whole white alabastrum(diploid) 3	0.456
	CNS0095597	Whole white alabastrum(diploid) 4	0.528
	CNS0095598	Silvery flower (diploied) 1	0.027
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.063
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.162
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.849
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.119
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.271
	CNS0095610	Silvery flower (tetraploid) 1	0.094
	CNS0095611	Silvery flower (tetraploid) 2	0.121
	CNS0095612	Silvery flower (tetraploid) 3	0.277
	CNS0095613	Golden flower (tetraploid) 1	0.343
	CNS0095614	Golden flower (tetraploid) 2	0.197
	CNS0095615	Golden flower (tetraploid) 3	0.045
CRA001975	CRR073297	Stem 1	0.144
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.129
	CRR073301	Leaf 2	0.342
	CRR073302	Leaf 3	0.420
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.019
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.068
	CRR073308	Third green 3	0.011
	CRR073309	Second white 1	0.007
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.074
	CRR073320	Tawny withering 3	0.000