Detail information of GWHGAAZE019669


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.10NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8LKZ8|RPS2_ARATH9E-55Disease resistance protein RPS2
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC0NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT4G26090.14E-48NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5731919457322868+
GWHAAZE00000005mRNA5731919457322868+
GWHAAZE00000005exon5731919457322313+
GWHAAZE00000005exon5732282157322868+
GWHAAZE00000005CDS5731919457322313+
GWHAAZE00000005CDS5732282157322868+
Transcript Sequence

Network for GWHGAAZE019669

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC1593922.00E-36
PF13855.7LRR_85235791.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE019669.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3012345678910111213Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.243
SRR3591706second leaf2.148
SRR3591707mature leaf3.312
SRR3591708Shoot apex3.630
SRR3591709Stem6.916
SRR3591710White floral bud1.105
SRR3591711White flower1.644
SRR3591712Green floral bud0.802
SRR3591713Yellow flower0.364
SRP173429 SRR8316895Juvenile bud stage 5.542
SRR8316896Juvenile bud stage 5.912
SRR8316897Juvenile bud stage 2.533
SRR8316894Third green stage 2.430
SRR8316900Third green stage 5.202
SRR8316901Third green stage 5.784
SRR8316898Complete white stage 1.561
SRR8316899Complete white stage 11.532
SRR8316903Complete white stage 2.946
SRR8316902Silver flowering stage2.172
SRR8316904Silver flowering stage3.781
SRR8316905Silver flowering stage1.791
SRR8316906Gold flowering stage 7.694
SRR8316907Gold flowering stage 4.643
SRR8316908Gold flowering stage 6.956
SRP132670SRR6706286Control3.399
SRR6706287Light intensity 50%3.513
SRR6706288Light intensity 20%3.768
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.620
CNS0095593Slightly white alabastrum(diploid) 23.865
CNS0095594Slightly white alabastrum(diploid) 33.306
CNS0095595Whole white alabastrum(diploid) 23.893
CNS0095596Whole white alabastrum(diploid) 32.058
CNS0095597Whole white alabastrum(diploid) 43.395
CNS0095598Silvery flower (diploied) 17.727
CNS0095599Silvery flower (diploied) 26.043
CNS0095600Silvery flower (diploied) 37.634
CNS0095601Golden flower (diploid) 15.863
CNS0095602Golden flower (diploid) 28.870
CNS0095603Golden flower (diploid) 38.310
CNS0095604Slightly white alabastrum(tetraploid) 14.610
CNS0095605Slightly white alabastrum(tetraploid) 23.609
CNS0095606Slightly white alabastrum(tetraploid) 311.783
CNS0095607Whole white alabastrum(tetraploid) 11.957
CNS0095608Whole white alabastrum(tetraploid) 22.089
CNS0095609Whole white alabastrum(tetraploid) 35.895
CNS0095610Silvery flower (tetraploid) 16.527
CNS0095611Silvery flower (tetraploid) 25.964
CNS0095612Silvery flower (tetraploid) 34.328
CNS0095613Golden flower (tetraploid) 12.201
CNS0095614Golden flower (tetraploid) 25.886
CNS0095615Golden flower (tetraploid) 32.793
CRA001975CRR073297Stem 15.920
CRR073298Stem 25.156
CRR073299Stem 34.392
CRR073300Leaf 15.711
CRR073301Leaf 23.962
CRR073302Leaf 34.275
CRR073303Juvenile bud 14.781
CRR073304Juvenile bud 24.263
CRR073305Juvenile bud 35.226
CRR073306Third green 10.676
CRR073307Third green 21.055
CRR073308Third green 30.901
CRR073309Second white 12.083
CRR073310Second white 22.724
CRR073311Second white 32.056
CRR073312Silver flowering 11.380
CRR073313Silver flowering 21.714
CRR073314Silver flowering 30.986
CRR073315Gold flowering 13.950
CRR073316Gold flowering 28.965
CRR073317Gold flowering 33.076
CRR073318Tawny withering 19.042
CRR073319Tawny withering 29.999
CRR073320Tawny withering 39.187