Detail information of GWHGAAZE019674


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.10NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8LKZ8|RPS2_ARATH3E-56Disease resistance protein RPS2
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC0NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT4G26090.12E-52NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5747438557477951-
GWHAAZE00000005mRNA5747438557477951-
GWHAAZE00000005exon5747438557474444-
GWHAAZE00000005exon5747487757477951-
GWHAAZE00000005CDS5747487757477951-
GWHAAZE00000005CDS5747438557474444-
Transcript Sequence

Network for GWHGAAZE019674

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC1443773.10E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.896
SRR3591706second leaf5.988
SRR3591707mature leaf9.072
SRR3591708Shoot apex7.031
SRR3591709Stem12.267
SRR3591710White floral bud6.283
SRR3591711White flower9.776
SRR3591712Green floral bud9.784
SRR3591713Yellow flower7.801
SRP173429 SRR8316895Juvenile bud stage 2.724
SRR8316896Juvenile bud stage 4.196
SRR8316897Juvenile bud stage 0.117
SRR8316894Third green stage 1.304
SRR8316900Third green stage 4.074
SRR8316901Third green stage 3.574
SRR8316898Complete white stage 0.725
SRR8316899Complete white stage 9.737
SRR8316903Complete white stage 1.610
SRR8316902Silver flowering stage1.506
SRR8316904Silver flowering stage1.392
SRR8316905Silver flowering stage0.757
SRR8316906Gold flowering stage 3.852
SRR8316907Gold flowering stage 3.786
SRR8316908Gold flowering stage 1.699
SRP132670SRR6706286Control2.813
SRR6706287Light intensity 50%3.254
SRR6706288Light intensity 20%3.068
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.917
CNS0095593Slightly white alabastrum(diploid) 22.863
CNS0095594Slightly white alabastrum(diploid) 33.407
CNS0095595Whole white alabastrum(diploid) 22.961
CNS0095596Whole white alabastrum(diploid) 32.165
CNS0095597Whole white alabastrum(diploid) 43.237
CNS0095598Silvery flower (diploied) 14.687
CNS0095599Silvery flower (diploied) 24.429
CNS0095600Silvery flower (diploied) 34.799
CNS0095601Golden flower (diploid) 15.252
CNS0095602Golden flower (diploid) 25.394
CNS0095603Golden flower (diploid) 34.988
CNS0095604Slightly white alabastrum(tetraploid) 14.085
CNS0095605Slightly white alabastrum(tetraploid) 23.703
CNS0095606Slightly white alabastrum(tetraploid) 310.269
CNS0095607Whole white alabastrum(tetraploid) 11.768
CNS0095608Whole white alabastrum(tetraploid) 22.590
CNS0095609Whole white alabastrum(tetraploid) 35.679
CNS0095610Silvery flower (tetraploid) 19.018
CNS0095611Silvery flower (tetraploid) 29.286
CNS0095612Silvery flower (tetraploid) 34.588
CNS0095613Golden flower (tetraploid) 13.374
CNS0095614Golden flower (tetraploid) 26.917
CNS0095615Golden flower (tetraploid) 33.130
CRA001975CRR073297Stem 13.367
CRR073298Stem 23.772
CRR073299Stem 33.264
CRR073300Leaf 13.630
CRR073301Leaf 23.270
CRR073302Leaf 33.161
CRR073303Juvenile bud 12.972
CRR073304Juvenile bud 21.543
CRR073305Juvenile bud 34.582
CRR073306Third green 10.074
CRR073307Third green 20.136
CRR073308Third green 30.321
CRR073309Second white 10.809
CRR073310Second white 21.065
CRR073311Second white 31.036
CRR073312Silver flowering 11.195
CRR073313Silver flowering 20.624
CRR073314Silver flowering 30.607
CRR073315Gold flowering 14.149
CRR073316Gold flowering 26.267
CRR073317Gold flowering 33.416
CRR073318Tawny withering 16.240
CRR073319Tawny withering 25.916
CRR073320Tawny withering 35.031