Gene detail

Detail information of GWHGAAZE019692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	3.2127E-162	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8LKZ8\|RPS2_ARATH	4E-48	Disease resistance protein RPS2
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	1E-162	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT4G26090.1	3E-42	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	57986059	57989777	+
GWHAAZE00000005	mRNA	57986059	57989777	+
GWHAAZE00000005	exon	57986059	57987338	+
GWHAAZE00000005	exon	57987426	57989187	+
GWHAAZE00000005	exon	57989730	57989777	+
GWHAAZE00000005	CDS	57986059	57987338	+
GWHAAZE00000005	CDS	57987426	57989187	+
GWHAAZE00000005	CDS	57989730	57989777	+

Transcript Sequence
>GWHTAAZE019714 ATGGCTGAACCTGTAGTAGCAGCAGCAACTATTGTTTCTGGGGTGATGGCGTTAAAGCCAGTATGGGATAGATTCAAGGAAGTTTCAAGGGATATGGAAAAGATTCACGGAGAGTTGACCAACACAATGCAGAAGTTGTTGGCCAAAAAGAAATCTCATCAGACAGTGTTAGAGTTACGGAACTCTACAAAGATACCATCAATAGACTACAATAACTGGATTCAAGAAGTGTTTGAGTTGGAAAAAGATGTGACAAATATATTTGCGAAATATGAAAGAAAAAGAAACAAGTCGAAGTTGTTACATTATATTCCATGTTCAAAGCTATGCAAGAAGATGAAAAGTATGTTAAAAGTGGCAGTTCGCTTGGAGGGCACAGAAGTGGGACACATTTTAGTGCGGAAAGAACCAGATCGTGTTGTGGAGATTAAAGAAGCACCCGATATCAAAAATTTCCCCACACTTTCTAGACCACTGGAGAAGATATTGGATCTGTTAACGAAAAGGAAATTCAGAGTCATTAAAATACAGGGGCAGATGGGCATGGGGAAGACAACTATAATGCAGACCTTGAACAACCATAAAAATATTGCTGATATGTTTAACTTAGTGATTTGGGTGAATGTCTCCTCGGAGGAAGACAACAGGAATTTCAGCCTTGAGCAAATGCAGCAAAGTATTGTGCGAAGACTAAACCTTGATGTTGAAGGTGCCAGTGATGACAAAGTCGCCGAAATAATACAGGGAGAGTTATGGGATAAGAAGTGTTTGCTACTTCTGGATGGGGTTAAGGAAGATCTCAAATTAAACCAAATTGGGATTGATCTTAATTATGGGAATGGTAGCAAGCTAGTGTTGACAACTACGGTGGGCCATTTTTTTCACTTGCCTGTGGACAAGGAGGTTAGAATTGAAAGATTATCCGATGACGAAGCAATATATATGTTTAAAAAAGTTCTAGGTCCGTCAAAATGTAAATCTTGGTCGGTTATGGCAGGAGTAGTTAAATGCTGCAACAATTGTCCGTTTGTGATAAAAATGATAGCAAGTGCCTTCAAAAAGAAAGAAACAAAGGAGAGCTGGGACCAAGGATATGCAAATTTGATAAGTTTTCCTGATGAGGGTGATGTTGCCATTCAAAAAGTGTATAAATATTTAGAATTTTGTTGTGATCAATTGGAGGGCGCTCAAAAGGATTGCCTTTTGTACTGTGCATTATATCCCGAAGGGAGTGACATTGGTGCAGATTGCTTATTGGATTGTTGGGCAGCTGAAGATTTGCATGGAGAATATGTTAGGATGCCAAAATTGATTCGGAAAGTGGCATTGGATAAGTTGTTAGCTGATTGTGAACATAAACATTTGGTGAAAATCAGTGAATCAGTACAAGATGCCCCAAGCATGGAAGACTGGAACCAGAAGAATCGAATTTCGTTGGTTGACAATAAACTGACAACGTTACCTGAACGCCCAGATTGTCCAATGCTTTCCACACTAATTTTGCAAAGAAATCAAAGTTTGAACAAAATTCCTAACTTTTTCTTTGAGAATGCTGGAAATCTCCGAGTTTTGGACTTGAGTCATACTGGAATCGCATCACTTCCATCTTCACTATGGAAGCTGAAACTTTTGAAAGTCCTGTATCTAAATGATTGCATTTGCTTGGCGAAGCTTCCATCTGAAATTGGAGAATTTGAGTCTCTTCAAGTGCTCGATATAAGAGGCAGTGGCAGTGGGGTTGACAATATACCACCCCAAAATGAGGGTGTGCTCGGGACGATCCACGTGCCTATTCAAAAATTTTTATTCGGGAAACTCAAGCCGGGTACATGTACACCTCTAACCAAGATAGAGAAATTGCGCAATTTGAAGCGGTTGCTGGTTTCGTTCAATAATTTTGGCAATGAAATTGATGCTCAATATATATCACTTTATTGCGATGTCATTTCCAAGATTTCTACTACATTGGAAGAGTTGGTCATTGATGTGAAATCAGACAAGAAGTGTTGCGGTGAGATGATTAATATGGTGAGAGACAAGGTAGCAGCTACCATGACAAAGCTGACAACTCTCAAGTTTTGCTTTGAAGACGGTGTTGAAGATGTCATAAAATTAGTTACTGATACTCCACAAACCTATTATCCCCTAGCAGATGATCTTACAAGTTTTGTTGAAAAATTAGATGGCTCTGCATCCCAATCATTTCAACTTTTCATCAGTTGCTCGATCTCATCACGTCCTCAAATTCCGATGCATCACCAGTATAGAAGGTATTTGAAATATTGCGAAGGGAGAGGCTGTAACCGTGCTATCAGTGAAGTGCTCACTATAACTGATGCATTTGAGTTGGTTAACCACAATGACCTTGAGCATGTATCTGAGTTTGGGACAGAAAGCTTGGACAGCGTCCAAGGTTTTCTAATTGAAGCTTGCAAGAATATTACTAGAATTGTTGACGGTAATTGTACCATGGACCCACTGCTTCCGAATCTACTGCGTCTATACATAAAGAATTTGCCGAAACTGGGAAGCATTTGGAAAGGTCCTGTGCACCCATGGAGCTTATCAAAACTGAGGACTTTGGTGATTGATGATTGCTTCAGCATAGAAGAGTTATTTATTGAACCAGCAAGTATTGCCATCCTCTCAAAACTGAGGAAGCTAGTACTTCTTAATTTGGCAAATTTGACAAGGATTTTCACAAATGTGTCACCGAAGTGGTCCGCCTTAGAGAAGCTTAAGATAAAAAACTGCCCCAGATTAACAGAGTTCCCTTTCTGCAAAGATAACACAGAGAAGCTGAGGAAGCTAACACTTTGTGGTATGCCGAATTTAGAAATGATTTGTGCATACGAGTCATTCGAATGGCCTGCCTTGGAGAAGCTCAAGATATATGGGTGTCGCAGTTTAACAGAGTTACCTTTCAACAAAGATAACGCGAAGAACTTGAATTTCATTGAAGCAGAGGAAGAATGGTGGAAGGCGTTGCGATGGCAAGACCTTGCGGTGAAAGAACGGCTCCAACTTTGCTGCTCCCTGCAGCCGATTGACCAAGATGCAACCACCAACACTGGAAATGGTGGCCCTTAA

Network for GWHGAAZE019692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	158	391	9.40E-28
PF13855.7	LRR_8	496	551	1.10E-07

Protein Sequence

>GWHPAAZE019703
MAEPVVAAATIVSGVMALKPVWDRFKEVSRDMEKIHGELTNTMQKLLAKKKSHQTVLELRNSTKIPSIDYNNWIQEVFELEKDVTNIFAKYERKRNKSKLLHYIPCSKLCKKMKSMLKVAVRLEGTEVGHILVRKEPDRVVEIKEAPDIKNFPTLSRPLEKILDLLTKRKFRVIKIQGQMGMGKTTIMQTLNNHKNIADMFNLVIWVNVSSEEDNRNFSLEQMQQSIVRRLNLDVEGASDDKVAEIIQGELWDKKCLLLLDGVKEDLKLNQIGIDLNYGNGSKLVLTTTVGHFFHLPVDKEVRIERLSDDEAIYMFKKVLGPSKCKSWSVMAGVVKCCNNCPFVIKMIASAFKKKETKESWDQGYANLISFPDEGDVAIQKVYKYLEFCCDQLEGAQKDCLLYCALYPEGSDIGADCLLDCWAAEDLHGEYVRMPKLIRKVALDKLLADCEHKHLVKISESVQDAPSMEDWNQKNRISLVDNKLTTLPERPDCPMLSTLILQRNQSLNKIPNFFFENAGNLRVLDLSHTGIASLPSSLWKLKLLKVLYLNDCICLAKLPSEIGEFESLQVLDIRGSGSGVDNIPPQNEGVLGTIHVPIQKFLFGKLKPGTCTPLTKIEKLRNLKRLLVSFNNFGNEIDAQYISLYCDVISKISTTLEELVIDVKSDKKCCGEMINMVRDKVAATMTKLTTLKFCFEDGVEDVIKLVTDTPQTYYPLADDLTSFVEKLDGSASQSFQLFISCSISSRPQIPMHHQYRRYLKYCEGRGCNRAISEVLTITDAFELVNHNDLEHVSEFGTESLDSVQGFLIEACKNITRIVDGNCTMDPLLPNLLRLYIKNLPKLGSIWKGPVHPWSLSKLRTLVIDDCFSIEELFIEPASIAILSKLRKLVLLNLANLTRIFTNVSPKWSALEKLKIKNCPRLTEFPFCKDNTEKLRKLTLCGMPNLEMICAYESFEWPALEKLKIYGCRSLTELPFNKDNAKNLNFIEAEEEWWKALRWQDLAVKERLQLCCSLQPIDQDATTNTGNGGP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.244
	SRR3591706	second leaf	0.773
	SRR3591707	mature leaf	1.798
	SRR3591708	Shoot apex	1.027
	SRR3591709	Stem	1.642
	SRR3591710	White floral bud	1.507
	SRR3591711	White flower	1.835
	SRR3591712	Green floral bud	1.019
	SRR3591713	Yellow flower	0.403
SRP173429	SRR8316895	Juvenile bud stage	0.062
	SRR8316896	Juvenile bud stage	0.071
	SRR8316897	Juvenile bud stage	0.090
	SRR8316894	Third green stage	0.022
	SRR8316900	Third green stage	0.055
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.027
	SRR8316899	Complete white stage	0.281
	SRR8316903	Complete white stage	0.038
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.354
SRP132670	SRR6706286	Control	0.031
	SRR6706287	Light intensity 50%	0.047
	SRR6706288	Light intensity 20%	0.023
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.108
	CNS0095593	Slightly white alabastrum(diploid) 2	0.098
	CNS0095594	Slightly white alabastrum(diploid) 3	0.067
	CNS0095595	Whole white alabastrum(diploid) 2	0.006
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.332
	CNS0095599	Silvery flower (diploied) 2	0.460
	CNS0095600	Silvery flower (diploied) 3	0.094
	CNS0095601	Golden flower (diploid) 1	0.327
	CNS0095602	Golden flower (diploid) 2	0.226
	CNS0095603	Golden flower (diploid) 3	0.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.084
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.014
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.457
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.038
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.228
	CNS0095610	Silvery flower (tetraploid) 1	0.153
	CNS0095611	Silvery flower (tetraploid) 2	0.176
	CNS0095612	Silvery flower (tetraploid) 3	0.320
	CNS0095613	Golden flower (tetraploid) 1	0.073
	CNS0095614	Golden flower (tetraploid) 2	0.097
	CNS0095615	Golden flower (tetraploid) 3	0.112
CRA001975	CRR073297	Stem 1	0.186
	CRR073298	Stem 2	0.099
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.008
	CRR073301	Leaf 2	0.087
	CRR073302	Leaf 3	0.027
	CRR073303	Juvenile bud 1	0.014
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.007
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.011
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.004
	CRR073312	Silver flowering 1	0.031
	CRR073313	Silver flowering 2	0.026
	CRR073314	Silver flowering 3	0.066
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.191
	CRR073317	Gold flowering 3	0.028
	CRR073318	Tawny withering 1	0.622
	CRR073319	Tawny withering 2	0.480
	CRR073320	Tawny withering 3	0.797