Gene detail

Detail information of GWHGAAZE019727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02987.1	2.0325E-106	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6NMB0\|HIBC3_ARATH	2E-82	Probable 3-hydroxyisobutyryl-CoA hydrolase 3
trEMBL	tr\|A0A068U3S9\|A0A068U3S9_COFCA	8E-107	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP02987.1}
TAIR10	AT2G30660.1	3E-68	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	59639456	59643800	-
GWHAAZE00000005	mRNA	59639456	59643800	-
GWHAAZE00000005	exon	59643708	59643800	-
GWHAAZE00000005	exon	59643306	59643389	-
GWHAAZE00000005	exon	59642659	59642743	-
GWHAAZE00000005	exon	59641908	59641993	-
GWHAAZE00000005	exon	59640495	59640598	-
GWHAAZE00000005	exon	59640056	59640116	-
GWHAAZE00000005	exon	59639673	59639771	-
GWHAAZE00000005	exon	59639456	59639566	-
GWHAAZE00000005	CDS	59643708	59643800	-
GWHAAZE00000005	CDS	59643306	59643389	-
GWHAAZE00000005	CDS	59642659	59642743	-
GWHAAZE00000005	CDS	59641908	59641993	-
GWHAAZE00000005	CDS	59640495	59640598	-
GWHAAZE00000005	CDS	59640056	59640116	-
GWHAAZE00000005	CDS	59639673	59639771	-
GWHAAZE00000005	CDS	59639456	59639566	-

Transcript Sequence
>GWHTAAZE019749 ATGAATGAAATAGGGCACTGGACTTTTGGTGCAAGTTTTTACAGGAAGCAACTTACTTTAGACTACTTACTTGGAACATATAAAAAGCCAGTGGTTGCACTCATAAATGGAATTGTAATGGGTGGAGGTGCTGGAATATCCATGCATGCGAGATTTCGAGTTGTTACAGAAAAGACTGTATTTGCCATGCCGGAAGCATCAATAGGATTATTTCCGGTTGTTGGGGCGTCTCATTTCTTATCTCGGCTTCCTGGCTTCCTTGGAGAATATCTGGGGTTAACAGGTGCAAGAATAGATGGGGGTTCCATGCTTGCATGTGGACTTGCAACTCATTTTATCCTTTCAAAGGATATTGCTTCCTTGGAAAATGCACTAGATATGGTGGCCCCATCTGGTGACTTTGATATATCGACTATAACTGGGATCATCAACAAATATGGTCAACAAGTGGAATTGGAGATCATCAACATATGCTTTTCAGGAGAAACTGTTGAAGAAATAATATCATCGTTGGAGGAAGTTTTTGCTGGTAGAGCAGAGAAATGGATCGTTGGTGCGATAAACTCAATGAAAAAAGCTTCTCCAACGAGCCTAAAAGTTTTTCTAAAATCGATTAGGGATGGTCGGGCACAGAAGCTTGATCGATGTCTCATACATGAATTTAATGCCCTTTCCCACATCTTGCGGAGAACAATTAGTGACGATTTCTTTGAGGTTGTTTAA

Network for GWHGAAZE019727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	11	239	4.10E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.239
	SRR3591710	White floral bud	3.278
	SRR3591711	White flower	0.147
	SRR3591712	Green floral bud	23.016
	SRR3591713	Yellow flower	0.091
SRP173429	SRR8316895	Juvenile bud stage	4.585
	SRR8316896	Juvenile bud stage	8.787
	SRR8316897	Juvenile bud stage	6.522
	SRR8316894	Third green stage	5.172
	SRR8316900	Third green stage	35.013
	SRR8316901	Third green stage	27.847
	SRR8316898	Complete white stage	4.556
	SRR8316899	Complete white stage	30.029
	SRR8316903	Complete white stage	4.109
	SRR8316902	Silver flowering stage	0.051
	SRR8316904	Silver flowering stage	0.006
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	0.024
	SRR8316907	Gold flowering stage	0.016
	SRR8316908	Gold flowering stage	0.072
SRP132670	SRR6706286	Control	17.634
	SRR6706287	Light intensity 50%	13.295
	SRR6706288	Light intensity 20%	22.673
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.383
	CNS0095593	Slightly white alabastrum(diploid) 2	3.321
	CNS0095594	Slightly white alabastrum(diploid) 3	1.487
	CNS0095595	Whole white alabastrum(diploid) 2	2.716
	CNS0095596	Whole white alabastrum(diploid) 3	2.921
	CNS0095597	Whole white alabastrum(diploid) 4	4.173
	CNS0095598	Silvery flower (diploied) 1	0.013
	CNS0095599	Silvery flower (diploied) 2	0.154
	CNS0095600	Silvery flower (diploied) 3	0.490
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.052
	CNS0095603	Golden flower (diploid) 3	0.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.799
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.616
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.908
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.982
	CNS0095610	Silvery flower (tetraploid) 1	0.147
	CNS0095611	Silvery flower (tetraploid) 2	0.639
	CNS0095612	Silvery flower (tetraploid) 3	0.550
	CNS0095613	Golden flower (tetraploid) 1	0.221
	CNS0095614	Golden flower (tetraploid) 2	0.117
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.076
	CRR073298	Stem 2	6.801
	CRR073299	Stem 3	4.820
	CRR073300	Leaf 1	24.740
	CRR073301	Leaf 2	18.284
	CRR073302	Leaf 3	38.267
	CRR073303	Juvenile bud 1	18.984
	CRR073304	Juvenile bud 2	43.996
	CRR073305	Juvenile bud 3	11.288
	CRR073306	Third green 1	0.267
	CRR073307	Third green 2	0.197
	CRR073308	Third green 3	0.094
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.001
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.088
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000