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Detail information of GWHGAAZE019734
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_009627963.1
1.2854E-158
PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Nicotiana tomentosiformis]
Swissprot
tr|O24454|UBP3_ARATH
1E-147
Ubiquitin carboxyl-terminal hydrolase 3
trEMBL
tr|F6HWM1|F6HWM1_VITVI
4E-157
Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIR10
AT4G39910.1
4E-125
ubiquitin-specific protease 3
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
59979525
59996674
+
GWHAAZE00000005
mRNA
59979525
59996674
+
GWHAAZE00000005
exon
59979525
59979650
+
GWHAAZE00000005
exon
59982183
59982296
+
GWHAAZE00000005
exon
59986124
59986266
+
GWHAAZE00000005
exon
59987369
59988729
+
GWHAAZE00000005
exon
59988958
59989109
+
GWHAAZE00000005
exon
59989191
59989316
+
GWHAAZE00000005
exon
59994320
59994520
+
GWHAAZE00000005
exon
59995588
59995769
+
GWHAAZE00000005
exon
59996275
59996674
+
GWHAAZE00000005
CDS
59979525
59979650
+
GWHAAZE00000005
CDS
59982183
59982296
+
GWHAAZE00000005
CDS
59986124
59986266
+
GWHAAZE00000005
CDS
59987369
59988729
+
GWHAAZE00000005
CDS
59988958
59989109
+
GWHAAZE00000005
CDS
59989191
59989316
+
GWHAAZE00000005
CDS
59994320
59994520
+
GWHAAZE00000005
CDS
59995588
59995769
+
GWHAAZE00000005
CDS
59996275
59996674
+
Transcript Sequence
>GWHTAAZE019756 ATGCATCAGATGGGTGCTGCCGGCTCGAAACTCGAGAAAGCTCTAGGCGATCAGTTCCCTGAAGGCGAACGCTACTTCGGCCTCGAGAATTTCGGCAACACTTGCTACTGTAACAGCGTTTTACAGGCACTTTATTTCTGCGTTCCATTCCGTGAACAGTTGATAGAATATTATTCAAATAACAAAAGTCTTGACGCAGAAGAAAATCTCTTAACATGTCTGGCAGACCTATTTATGCAGATAAGTTCACAAAAGAAGAAAACAGGTGTCACTGCTCCAAAGCGCTTTGTACAAAGATTGAAGAAACAAAATGAGATTTTCCGCAGCTATATGCACCAGGTATGTTCGTACCTTGAGAAAAAATTCTGTGTTGGTTTTTATTTCTCACCACATCTAGGCTTCAGTTTTGATGACACCTCAACCGTAGGAGGAAGCTCTGGCCAATTTGCCGCTGTCCAAAGACCGGTTGTCAAAATGCACTTCCGTTCTCTTGAGGCACCGAGGCACAGTTCTGAACAAGGAGGGGATTATGAAGGGTTACAAAGAGAGGATTCGATTTATAAGGGAAGGGAGCGAAGGTTCAAACTTGAGTTTAAATCCTACATATTCAAGATTAACAATGGAGGAACAATGGCCACAATTGTTGAAGAAATCCGAAAACAAAGGTATTCGGTTTGTATTGATTTTGGAGGGATTAATTGGTTGATTAATGATATGAAGGCAGCAAAGCAACAATATGATAACAAGAGGTTCTTCAGTAAGTTCCAAGCTTCTTATGGGCTATTTTTGTTGCAACGATATAATAATAGTAAGGGTAGTTTCATTAGTTTGGCGAGACTTCATCGGGGAGTAGTGCAAAATGTAGTTAGCTTTCCAGCTGGAGATAGAGGAAGGGGATGGTTGAAAGTTAGTGAAGAATTACATCAGCTATTGTTCGACTCAGGAAGGAGGCCAAGAGAGGAACTAAGGAGCCGACAATGGGTGAAGATAACAGACCACAAGCCACAGAGGATAGAGGAAAACGAGGTTAGGAGTACATATGCAGAGGTCGTAATAAAGAAACAGCGGGAAGTAGTTAATAAGATCGGTAACGCAGACGCTAAGTTCGTAAATGATAGTAGTATTCAAAAATCCCAGATTATCAGTGCAATGTCAGCAAGGGGGGCTAGGTTGAAGGAATTAGCATTAGGCAAGCATGGCTGGAAAAAAGCAGTTATTTGTATTCGGCAGAGCCTCTGGGATAGTTGGAGGGATATTCAGATGGTCGTTAATGTACAAAGTCACAAGAACTACAACCTTTGCCCTTTTCAGCCAGATAAAGCAGTTTTTTGGTGTGACGATGAATGCGAAGCAGAAAATCTTGTAAAGAAAGGTATAACAGAAATTAATGAGCGCCTCTATTTTAAAATGCAAAGTGGTGATCAAGCACAAGCCGTATCGACGAAGAAGTTAGCATGTACGGGGGGATGGATCGAGATAGCGGATTTGCCGTTAAAATGGTGGAATTTGGAAGTTTTTAAAGCTATCGGATACGAGTGCGGAGGCTTGGTGGAAATTGACTATAAAACATTGAATTTCGAGCAGATTTTCAGTGCAAGAATTAAAATTGGAGGCAAAGATAGTGGGTTTATTCCGGCACATATCGATATGTCCATAGGGGAGGAAAAGTTCACGATAAGCCTCAAAGTCCTGTCTAATTTGAATATTCAGAAACAAACCAGATATAAATTCCCAACATTCTTAGGTATTGGACAAGCTAGTGGAGGCGAGTTTAAGTTAGTCGAAAGCAATGAACATAATGAGCTCTTTGCTGGTGGGAAGGACCAATTGGCTGGGCCTTCTACAAGGCAACGGGAAGCATCAGAGGAGAGGTATGTGAAGGGAGCTGAAGATGTGAGACGTAAAGCGAAGAAAGAGATATCGCTGAAGGCTTACGGCGTACGAGAAGAAGAGAATGATGAAGCAATATTTAGCAAATGGGAGGAGGGGTTAGTGGAGAGAGAGGGAAGGCAGGAGGAAGGTGATGCCCATGAATTCTTGAACTATTTGCTGAATGAACTAGTTGACATACTGGAGAAAGAGTCTGCTGCAAAGATCACTAATCCAGAAACTTCCTCATCACCGCCTGAAAAAATTGCAAATGGACCAATAAAGAATGCTCCTTATGCCAATGGTAGTGCTCAAAAAGTGCCTCTGGTCACCTGGGTCCACAAAAATTTCCAGGGTTTACTCACAAATGAAACAAAGTGCTTAAGATGTGAAACAGTAACAGCAAGGGACGAAACATTTCTTGATCTGAGCCTTGATATTGAGCAGAATAGTTCAATCACTAGCTGCCTTAAAAACTTTAGTTCCACTGAGACTTTGAATGCTGAGGACAAATTCTTTTGTGACAAGTGCTGCAGTTTACAGGAAGCCCAGAAGAGAATGAAGATAAAAAAGACACCCCATATCCTAGTGATCCACCTAAAGCGGTTTAAGTATATCGAGCAGCTTAGCAGATACAAGAAGCTCTCGTACCGAGTGGTCTTCCCCCTTGAGCTGAAGCTGAGCAACACAGTCGAGGATGCGGACCCCGAGTACTCTCTCTTTGCCGTGGTGGTCCATGTGGGCAGTGGGCCCAACCACGGTCACTACGTGAGCCTCGTGAAGAGCCACAACCACTGGCTCTTCTTTGATGACGAGAATGTGGAGATGATTGATGAGTCTGCGGTCCAGACTTTCTTCGGGTCTGCCCAAGAGTACTCGAGTAACACAGACCACGGCTACATTTTGTTCTATGAGAGAGTTTCTACTGGTAGCTGA
Network for GWHGAAZE019734
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00443.30
UCH
26
113
1.50E-16
PF14111.7
DUF4283
410
536
3.30E-10
PF00443.30
UCH
673
927
2.20E-35
Protein Sequence
>GWHPAAZE019745 MHQMGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLIEYYSNNKSLDAEENLLTCLADLFMQISSQKKKTGVTAPKRFVQRLKKQNEIFRSYMHQVCSYLEKKFCVGFYFSPHLGFSFDDTSTVGGSSGQFAAVQRPVVKMHFRSLEAPRHSSEQGGDYEGLQREDSIYKGRERRFKLEFKSYIFKINNGGTMATIVEEIRKQRYSVCIDFGGINWLINDMKAAKQQYDNKRFFSKFQASYGLFLLQRYNNSKGSFISLARLHRGVVQNVVSFPAGDRGRGWLKVSEELHQLLFDSGRRPREELRSRQWVKITDHKPQRIEENEVRSTYAEVVIKKQREVVNKIGNADAKFVNDSSIQKSQIISAMSARGARLKELALGKHGWKKAVICIRQSLWDSWRDIQMVVNVQSHKNYNLCPFQPDKAVFWCDDECEAENLVKKGITEINERLYFKMQSGDQAQAVSTKKLACTGGWIEIADLPLKWWNLEVFKAIGYECGGLVEIDYKTLNFEQIFSARIKIGGKDSGFIPAHIDMSIGEEKFTISLKVLSNLNIQKQTRYKFPTFLGIGQASGGEFKLVESNEHNELFAGGKDQLAGPSTRQREASEERYVKGAEDVRRKAKKEISLKAYGVREEENDEAIFSKWEEGLVEREGRQEEGDAHEFLNYLLNELVDILEKESAAKITNPETSSSPPEKIANGPIKNAPYANGSAQKVPLVTWVHKNFQGLLTNETKCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKTPHILVIHLKRFKYIEQLSRYKKLSYRVVFPLELKLSNTVEDADPEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYERVSTGS
Gene family
Gene family
subfamily
Ubiquitin Family
USP
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0016579
biological_process
protein deubiquitination
GO:0006511
biological_process
ubiquitin-dependent protein catabolic process
GO:0036459
molecular_function
thiol-dependent ubiquitinyl hydrolase activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
5.761
SRR3591706
second leaf
3.175
SRR3591707
mature leaf
2.490
SRR3591708
Shoot apex
4.731
SRR3591709
Stem
4.990
SRR3591710
White floral bud
4.231
SRR3591711
White flower
5.736
SRR3591712
Green floral bud
6.755
SRR3591713
Yellow flower
4.065
SRP173429
SRR8316895
Juvenile bud stage
5.029
SRR8316896
Juvenile bud stage
8.075
SRR8316897
Juvenile bud stage
3.936
SRR8316894
Third green stage
2.727
SRR8316900
Third green stage
7.612
SRR8316901
Third green stage
7.193
SRR8316898
Complete white stage
2.894
SRR8316899
Complete white stage
7.280
SRR8316903
Complete white stage
4.385
SRR8316902
Silver flowering stage
3.839
SRR8316904
Silver flowering stage
4.251
SRR8316905
Silver flowering stage
2.183
SRR8316906
Gold flowering stage
5.762
SRR8316907
Gold flowering stage
5.241
SRR8316908
Gold flowering stage
5.766
SRP132670
SRR6706286
Control
3.339
SRR6706287
Light intensity 50%
3.276
SRR6706288
Light intensity 20%
3.432
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
6.294
CNS0095593
Slightly white alabastrum(diploid) 2
5.782
CNS0095594
Slightly white alabastrum(diploid) 3
7.122
CNS0095595
Whole white alabastrum(diploid) 2
6.085
CNS0095596
Whole white alabastrum(diploid) 3
6.380
CNS0095597
Whole white alabastrum(diploid) 4
5.359
CNS0095598
Silvery flower (diploied) 1
5.890
CNS0095599
Silvery flower (diploied) 2
4.206
CNS0095600
Silvery flower (diploied) 3
7.083
CNS0095601
Golden flower (diploid) 1
3.758
CNS0095602
Golden flower (diploid) 2
5.820
CNS0095603
Golden flower (diploid) 3
5.900
CNS0095604
Slightly white alabastrum(tetraploid) 1
7.228
CNS0095605
Slightly white alabastrum(tetraploid) 2
5.781
CNS0095606
Slightly white alabastrum(tetraploid) 3
6.715
CNS0095607
Whole white alabastrum(tetraploid) 1
5.837
CNS0095608
Whole white alabastrum(tetraploid) 2
6.588
CNS0095609
Whole white alabastrum(tetraploid) 3
7.089
CNS0095610
Silvery flower (tetraploid) 1
6.616
CNS0095611
Silvery flower (tetraploid) 2
8.176
CNS0095612
Silvery flower (tetraploid) 3
6.682
CNS0095613
Golden flower (tetraploid) 1
4.299
CNS0095614
Golden flower (tetraploid) 2
5.053
CNS0095615
Golden flower (tetraploid) 3
4.697
CRA001975
CRR073297
Stem 1
4.840
CRR073298
Stem 2
4.265
CRR073299
Stem 3
3.392
CRR073300
Leaf 1
5.025
CRR073301
Leaf 2
4.934
CRR073302
Leaf 3
3.466
CRR073303
Juvenile bud 1
3.830
CRR073304
Juvenile bud 2
3.647
CRR073305
Juvenile bud 3
3.610
CRR073306
Third green 1
2.013
CRR073307
Third green 2
2.910
CRR073308
Third green 3
3.220
CRR073309
Second white 1
2.980
CRR073310
Second white 2
3.134
CRR073311
Second white 3
3.619
CRR073312
Silver flowering 1
2.032
CRR073313
Silver flowering 2
1.714
CRR073314
Silver flowering 3
1.235
CRR073315
Gold flowering 1
2.628
CRR073316
Gold flowering 2
3.671
CRR073317
Gold flowering 3
1.621
CRR073318
Tawny withering 1
3.966
CRR073319
Tawny withering 2
4.916
CRR073320
Tawny withering 3
5.618