Detail information of GWHGAAZE019734


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009627963.11.2854E-158PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Nicotiana tomentosiformis]
Swissprottr|O24454|UBP3_ARATH1E-147Ubiquitin carboxyl-terminal hydrolase 3
trEMBLtr|F6HWM1|F6HWM1_VITVI4E-157Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIR10AT4G39910.14E-125ubiquitin-specific protease 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5997952559996674+
GWHAAZE00000005mRNA5997952559996674+
GWHAAZE00000005exon5997952559979650+
GWHAAZE00000005exon5998218359982296+
GWHAAZE00000005exon5998612459986266+
GWHAAZE00000005exon5998736959988729+
GWHAAZE00000005exon5998895859989109+
GWHAAZE00000005exon5998919159989316+
GWHAAZE00000005exon5999432059994520+
GWHAAZE00000005exon5999558859995769+
GWHAAZE00000005exon5999627559996674+
GWHAAZE00000005CDS5997952559979650+
GWHAAZE00000005CDS5998218359982296+
GWHAAZE00000005CDS5998612459986266+
GWHAAZE00000005CDS5998736959988729+
GWHAAZE00000005CDS5998895859989109+
GWHAAZE00000005CDS5998919159989316+
GWHAAZE00000005CDS5999432059994520+
GWHAAZE00000005CDS5999558859995769+
GWHAAZE00000005CDS5999627559996674+
Transcript Sequence

Network for GWHGAAZE019734

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00443.30UCH261131.50E-16
PF14111.7DUF42834105363.30E-10
PF00443.30UCH6739272.20E-35
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016579biological_processprotein deubiquitination
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0036459molecular_functionthiol-dependent ubiquitinyl hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.761
SRR3591706second leaf3.175
SRR3591707mature leaf2.490
SRR3591708Shoot apex4.731
SRR3591709Stem4.990
SRR3591710White floral bud4.231
SRR3591711White flower5.736
SRR3591712Green floral bud6.755
SRR3591713Yellow flower4.065
SRP173429 SRR8316895Juvenile bud stage 5.029
SRR8316896Juvenile bud stage 8.075
SRR8316897Juvenile bud stage 3.936
SRR8316894Third green stage 2.727
SRR8316900Third green stage 7.612
SRR8316901Third green stage 7.193
SRR8316898Complete white stage 2.894
SRR8316899Complete white stage 7.280
SRR8316903Complete white stage 4.385
SRR8316902Silver flowering stage3.839
SRR8316904Silver flowering stage4.251
SRR8316905Silver flowering stage2.183
SRR8316906Gold flowering stage 5.762
SRR8316907Gold flowering stage 5.241
SRR8316908Gold flowering stage 5.766
SRP132670SRR6706286Control3.339
SRR6706287Light intensity 50%3.276
SRR6706288Light intensity 20%3.432
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.294
CNS0095593Slightly white alabastrum(diploid) 25.782
CNS0095594Slightly white alabastrum(diploid) 37.122
CNS0095595Whole white alabastrum(diploid) 26.085
CNS0095596Whole white alabastrum(diploid) 36.380
CNS0095597Whole white alabastrum(diploid) 45.359
CNS0095598Silvery flower (diploied) 15.890
CNS0095599Silvery flower (diploied) 24.206
CNS0095600Silvery flower (diploied) 37.083
CNS0095601Golden flower (diploid) 13.758
CNS0095602Golden flower (diploid) 25.820
CNS0095603Golden flower (diploid) 35.900
CNS0095604Slightly white alabastrum(tetraploid) 17.228
CNS0095605Slightly white alabastrum(tetraploid) 25.781
CNS0095606Slightly white alabastrum(tetraploid) 36.715
CNS0095607Whole white alabastrum(tetraploid) 15.837
CNS0095608Whole white alabastrum(tetraploid) 26.588
CNS0095609Whole white alabastrum(tetraploid) 37.089
CNS0095610Silvery flower (tetraploid) 16.616
CNS0095611Silvery flower (tetraploid) 28.176
CNS0095612Silvery flower (tetraploid) 36.682
CNS0095613Golden flower (tetraploid) 14.299
CNS0095614Golden flower (tetraploid) 25.053
CNS0095615Golden flower (tetraploid) 34.697
CRA001975CRR073297Stem 14.840
CRR073298Stem 24.265
CRR073299Stem 33.392
CRR073300Leaf 15.025
CRR073301Leaf 24.934
CRR073302Leaf 33.466
CRR073303Juvenile bud 13.830
CRR073304Juvenile bud 23.647
CRR073305Juvenile bud 33.610
CRR073306Third green 12.013
CRR073307Third green 22.910
CRR073308Third green 33.220
CRR073309Second white 12.980
CRR073310Second white 23.134
CRR073311Second white 33.619
CRR073312Silver flowering 12.032
CRR073313Silver flowering 21.714
CRR073314Silver flowering 31.235
CRR073315Gold flowering 12.628
CRR073316Gold flowering 23.671
CRR073317Gold flowering 31.621
CRR073318Tawny withering 13.966
CRR073319Tawny withering 24.916
CRR073320Tawny withering 35.618