Detail information of GWHGAAZE019748


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.11.49566E-89NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8LKZ8|RPS2_ARATH2E-41Disease resistance protein RPS2
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC6E-90NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT1G12210.15E-31RPS5-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene6028283060285132+
GWHAAZE00000005mRNA6028283060285132+
GWHAAZE00000005exon6028283060282904+
GWHAAZE00000005exon6028346860285132+
GWHAAZE00000005CDS6028283060282904+
GWHAAZE00000005CDS6028346860285132+
Transcript Sequence

Network for GWHGAAZE019748

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC1944321.30E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.400
SRR3591706second leaf1.020
SRR3591707mature leaf0.759
SRR3591708Shoot apex0.993
SRR3591709Stem1.608
SRR3591710White floral bud0.757
SRR3591711White flower0.924
SRR3591712Green floral bud0.801
SRR3591713Yellow flower0.619
SRP173429 SRR8316895Juvenile bud stage 1.843
SRR8316896Juvenile bud stage 3.033
SRR8316897Juvenile bud stage 0.184
SRR8316894Third green stage 1.279
SRR8316900Third green stage 3.619
SRR8316901Third green stage 3.555
SRR8316898Complete white stage 0.904
SRR8316899Complete white stage 4.002
SRR8316903Complete white stage 1.520
SRR8316902Silver flowering stage0.316
SRR8316904Silver flowering stage1.159
SRR8316905Silver flowering stage0.639
SRR8316906Gold flowering stage 2.733
SRR8316907Gold flowering stage 1.701
SRR8316908Gold flowering stage 1.931
SRP132670SRR6706286Control3.968
SRR6706287Light intensity 50%3.661
SRR6706288Light intensity 20%4.213
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.177
CNS0095593Slightly white alabastrum(diploid) 21.039
CNS0095594Slightly white alabastrum(diploid) 31.161
CNS0095595Whole white alabastrum(diploid) 21.126
CNS0095596Whole white alabastrum(diploid) 30.880
CNS0095597Whole white alabastrum(diploid) 41.360
CNS0095598Silvery flower (diploied) 12.214
CNS0095599Silvery flower (diploied) 22.271
CNS0095600Silvery flower (diploied) 33.233
CNS0095601Golden flower (diploid) 11.250
CNS0095602Golden flower (diploid) 21.661
CNS0095603Golden flower (diploid) 32.181
CNS0095604Slightly white alabastrum(tetraploid) 11.650
CNS0095605Slightly white alabastrum(tetraploid) 21.280
CNS0095606Slightly white alabastrum(tetraploid) 38.817
CNS0095607Whole white alabastrum(tetraploid) 11.492
CNS0095608Whole white alabastrum(tetraploid) 20.514
CNS0095609Whole white alabastrum(tetraploid) 36.909
CNS0095610Silvery flower (tetraploid) 15.486
CNS0095611Silvery flower (tetraploid) 24.766
CNS0095612Silvery flower (tetraploid) 33.574
CNS0095613Golden flower (tetraploid) 11.855
CNS0095614Golden flower (tetraploid) 26.150
CNS0095615Golden flower (tetraploid) 35.163
CRA001975CRR073297Stem 13.270
CRR073298Stem 22.570
CRR073299Stem 31.802
CRR073300Leaf 12.539
CRR073301Leaf 22.474
CRR073302Leaf 32.071
CRR073303Juvenile bud 11.072
CRR073304Juvenile bud 21.439
CRR073305Juvenile bud 31.694
CRR073306Third green 10.194
CRR073307Third green 20.078
CRR073308Third green 30.458
CRR073309Second white 10.497
CRR073310Second white 20.900
CRR073311Second white 30.942
CRR073312Silver flowering 10.625
CRR073313Silver flowering 20.293
CRR073314Silver flowering 30.460
CRR073315Gold flowering 11.224
CRR073316Gold flowering 21.854
CRR073317Gold flowering 30.677
CRR073318Tawny withering 12.650
CRR073319Tawny withering 21.555
CRR073320Tawny withering 31.108