Detail information of GWHGAAZE019773


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656869.11.1524E-103PREDICTED: RING-H2 finger protein ATL43 [Vitis vinifera]
Swissprottr|Q5EAE9|ATL43_ARATH3E-86RING-H2 finger protein ATL43 (Precursor)
trEMBLtr|A0A067K4K2|A0A067K4K2_JATCU5E-101Uncharacterized protein {ECO:0000313|EMBL:KDP31067.1}
TAIR10AT5G05810.12E-66RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene6114447261145737+
GWHAAZE00000005mRNA6114447261145737+
GWHAAZE00000005exon6114447261145737+
GWHAAZE00000005CDS6114447261145737+
Transcript Sequence

Network for GWHGAAZE019773

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2991427.30E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.381
SRR3591706second leaf6.320
SRR3591707mature leaf7.625
SRR3591708Shoot apex7.408
SRR3591709Stem2.680
SRR3591710White floral bud1.263
SRR3591711White flower1.282
SRR3591712Green floral bud2.337
SRR3591713Yellow flower0.125
SRP173429 SRR8316895Juvenile bud stage 5.134
SRR8316896Juvenile bud stage 6.915
SRR8316897Juvenile bud stage 2.060
SRR8316894Third green stage 2.027
SRR8316900Third green stage 3.618
SRR8316901Third green stage 2.677
SRR8316898Complete white stage 0.154
SRR8316899Complete white stage 10.343
SRR8316903Complete white stage 0.610
SRR8316902Silver flowering stage0.356
SRR8316904Silver flowering stage0.436
SRR8316905Silver flowering stage0.182
SRR8316906Gold flowering stage 1.631
SRR8316907Gold flowering stage 1.318
SRR8316908Gold flowering stage 0.725
SRP132670SRR6706286Control4.186
SRR6706287Light intensity 50%3.437
SRR6706288Light intensity 20%3.749
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.462
CNS0095593Slightly white alabastrum(diploid) 22.209
CNS0095594Slightly white alabastrum(diploid) 31.274
CNS0095595Whole white alabastrum(diploid) 23.309
CNS0095596Whole white alabastrum(diploid) 32.051
CNS0095597Whole white alabastrum(diploid) 43.265
CNS0095598Silvery flower (diploied) 15.621
CNS0095599Silvery flower (diploied) 29.871
CNS0095600Silvery flower (diploied) 31.344
CNS0095601Golden flower (diploid) 17.111
CNS0095602Golden flower (diploid) 24.191
CNS0095603Golden flower (diploid) 33.771
CNS0095604Slightly white alabastrum(tetraploid) 14.627
CNS0095605Slightly white alabastrum(tetraploid) 23.820
CNS0095606Slightly white alabastrum(tetraploid) 37.617
CNS0095607Whole white alabastrum(tetraploid) 13.525
CNS0095608Whole white alabastrum(tetraploid) 24.366
CNS0095609Whole white alabastrum(tetraploid) 33.337
CNS0095610Silvery flower (tetraploid) 10.157
CNS0095611Silvery flower (tetraploid) 22.111
CNS0095612Silvery flower (tetraploid) 30.294
CNS0095613Golden flower (tetraploid) 10.321
CNS0095614Golden flower (tetraploid) 21.056
CNS0095615Golden flower (tetraploid) 30.055
CRA001975CRR073297Stem 112.714
CRR073298Stem 210.601
CRR073299Stem 314.440
CRR073300Leaf 16.569
CRR073301Leaf 27.322
CRR073302Leaf 34.414
CRR073303Juvenile bud 19.628
CRR073304Juvenile bud 21.764
CRR073305Juvenile bud 312.695
CRR073306Third green 13.289
CRR073307Third green 21.410
CRR073308Third green 32.026
CRR073309Second white 112.026
CRR073310Second white 27.115
CRR073311Second white 311.757
CRR073312Silver flowering 117.230
CRR073313Silver flowering 211.674
CRR073314Silver flowering 310.961
CRR073315Gold flowering 14.066
CRR073316Gold flowering 22.327
CRR073317Gold flowering 34.380
CRR073318Tawny withering 16.599
CRR073319Tawny withering 23.767
CRR073320Tawny withering 32.806