Gene detail

Detail information of GWHGAAZE019777

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656869.1	5.0747E-101	PREDICTED: RING-H2 finger protein ATL43 [Vitis vinifera]
Swissprot	tr\|Q5EAE9\|ATL43_ARATH	1E-85	RING-H2 finger protein ATL43 (Precursor)
trEMBL	tr\|A0A067K4K2\|A0A067K4K2_JATCU	2E-100	Uncharacterized protein {ECO:0000313\|EMBL:KDP31067.1}
TAIR10	AT5G05810.1	4E-65	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	61386187	61387452	+
GWHAAZE00000005	mRNA	61386187	61387452	+
GWHAAZE00000005	exon	61386187	61387452	+
GWHAAZE00000005	CDS	61386187	61387452	+

Transcript Sequence
>GWHTAAZE019799 CCAATTTTGAATCAGATTCAAAGATCTCCATTCAAGCCAAGTGTTGCTGTTATTGTAGGAATTGTGACGACCATCTTCTCCATCACCTTTCTTATACTTCTTTACATCAAACACTGCAAGAGAGGAAGCTTCAATAATAACAACCACCACCACAACAATAACGTTTATGGGTCAAGCTTCTTGGCCGCGCCGGGGTCCGGTGGATCAAGAAAGAACTCTGGCATCGACCGGATGGTGATAGAATCCTTGCCAATTTTCAAATTCGGATCGCTGTGCGGACACAAGGATGGACTAGAATGTGCGGTTTGCCTCAACAAGTTTGAATCCGCCGAGTTCCTGAAATTGCTCCCGCAATGCAAGCACGCATTTCACGTCGAATGCGTTGATACTTGGCTCGACGCGCATTCGACTTGTCCTCTCTGCCGTCATCGCGTCCATCCTGAAGACATCGTGTTCATTCAAGGCGACGCCACCAATATATTACATCATCATCTTGATGAAACTGAAGCCAAAGATGTCAATTATGAAAAGTTAGAAATGGGAAATATTCCTAGACGAGTGTCTGCTAGGCACTCGTCTCCCGGAGAGATAGGTAGAAGAAGAAGCACTGCTTACTCTTCTACCTCAAAAGCTAATAAAGAAGGAATTTCAACCCGAAGATCTCTAGATAGCATACGGAGCCTTTCACTTCCGAAAAAAAAGATCATCAACTTCATCAATAATAGTAGTAAATCGGATCAAGAAGAGGAGCTATTAGCCGGGGCCCGCAAAGACGGACTCTTACTAACCGCCGAAGAGAAACAACGGCGGTTAGGACACCGGATCATTGTATCCGGTGCAGGGAGTGATCGCAAGCCCAACACCGACCATAGGTGGAGCGAAGTGAATCCATCAGATCTATTGTATCTACGATCAGAAATGATCATCAGCGACAGCCGTAGATTATCAGGAGGATCATCATCATCAAGGCCGTCGGATTCTCAAACTGGAGATGGTGAAGAGGGCATTAATGGTAGTGATAATAAGAGAAGGTGCAGCAGAAGTAAGCAAAAGCAGAGGAATGGCAGAAGCGTAATTAATTCGAGAAGTGTGTCGGAAATCACGGGGTTGAGAAGGACAAGACAATATAATAATAGTATTTGTGAGCGGCAAGAAGAGCGGAAAGCAGGAGTTCTGTCGAGATGGTTGGCTTGGACTTCGGATTTTCAATCTCACTCGCGATCACAACAATCGCTTTCACGCTCCTCATCACCCCTTCCTTTGTAG

Network for GWHGAAZE019777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	99	142	7.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.483
	SRR3591706	second leaf	4.042
	SRR3591707	mature leaf	4.517
	SRR3591708	Shoot apex	3.167
	SRR3591709	Stem	1.529
	SRR3591710	White floral bud	1.233
	SRR3591711	White flower	0.546
	SRR3591712	Green floral bud	1.356
	SRR3591713	Yellow flower	0.170
SRP173429	SRR8316895	Juvenile bud stage	5.458
	SRR8316896	Juvenile bud stage	5.775
	SRR8316897	Juvenile bud stage	3.809
	SRR8316894	Third green stage	1.280
	SRR8316900	Third green stage	3.118
	SRR8316901	Third green stage	2.336
	SRR8316898	Complete white stage	0.243
	SRR8316899	Complete white stage	8.051
	SRR8316903	Complete white stage	0.595
	SRR8316902	Silver flowering stage	0.104
	SRR8316904	Silver flowering stage	0.126
	SRR8316905	Silver flowering stage	0.081
	SRR8316906	Gold flowering stage	0.136
	SRR8316907	Gold flowering stage	0.094
	SRR8316908	Gold flowering stage	0.021
SRP132670	SRR6706286	Control	4.704
	SRR6706287	Light intensity 50%	2.922
	SRR6706288	Light intensity 20%	3.166
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.965
	CNS0095593	Slightly white alabastrum(diploid) 2	3.425
	CNS0095594	Slightly white alabastrum(diploid) 3	1.280
	CNS0095595	Whole white alabastrum(diploid) 2	3.090
	CNS0095596	Whole white alabastrum(diploid) 3	1.566
	CNS0095597	Whole white alabastrum(diploid) 4	2.529
	CNS0095598	Silvery flower (diploied) 1	6.201
	CNS0095599	Silvery flower (diploied) 2	12.179
	CNS0095600	Silvery flower (diploied) 3	1.343
	CNS0095601	Golden flower (diploid) 1	11.784
	CNS0095602	Golden flower (diploid) 2	5.719
	CNS0095603	Golden flower (diploid) 3	4.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.967
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.506
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.799
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.019
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.151
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.045
	CNS0095610	Silvery flower (tetraploid) 1	0.557
	CNS0095611	Silvery flower (tetraploid) 2	2.299
	CNS0095612	Silvery flower (tetraploid) 3	0.377
	CNS0095613	Golden flower (tetraploid) 1	0.471
	CNS0095614	Golden flower (tetraploid) 2	1.031
	CNS0095615	Golden flower (tetraploid) 3	0.049
CRA001975	CRR073297	Stem 1	9.644
	CRR073298	Stem 2	8.121
	CRR073299	Stem 3	10.938
	CRR073300	Leaf 1	4.933
	CRR073301	Leaf 2	6.003
	CRR073302	Leaf 3	4.345
	CRR073303	Juvenile bud 1	7.086
	CRR073304	Juvenile bud 2	1.555
	CRR073305	Juvenile bud 3	10.933
	CRR073306	Third green 1	0.329
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.211
	CRR073309	Second white 1	1.009
	CRR073310	Second white 2	0.595
	CRR073311	Second white 3	0.982
	CRR073312	Silver flowering 1	1.815
	CRR073313	Silver flowering 2	0.772
	CRR073314	Silver flowering 3	1.289
	CRR073315	Gold flowering 1	2.284
	CRR073316	Gold flowering 2	1.375
	CRR073317	Gold flowering 3	2.094
	CRR073318	Tawny withering 1	6.603
	CRR073319	Tawny withering 2	6.496
	CRR073320	Tawny withering 3	3.406