Gene detail

Detail information of GWHGAAZE019780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269263.1	0	PREDICTED: pathogenesis-related homeodomain protein [Vitis vinifera]
Swissprot	tr\|P48785\|PRH_ARATH	6E-108	Pathogenesis-related homeodomain protein
trEMBL	tr\|D7UBI5\|D7UBI5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40100.3}
TAIR10	AT4G29940.1	1E-90	pathogenesis related homeodomain protein A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	61567640	61577512	+
GWHAAZE00000005	mRNA	61567640	61577512	+
GWHAAZE00000005	exon	61567640	61568049	+
GWHAAZE00000005	exon	61568800	61568994	+
GWHAAZE00000005	exon	61571609	61571730	+
GWHAAZE00000005	exon	61572145	61572257	+
GWHAAZE00000005	exon	61572633	61572938	+
GWHAAZE00000005	exon	61573950	61574120	+
GWHAAZE00000005	exon	61574898	61574963	+
GWHAAZE00000005	exon	61575967	61576017	+
GWHAAZE00000005	exon	61576614	61576850	+
GWHAAZE00000005	exon	61577234	61577512	+
GWHAAZE00000005	CDS	61567640	61568049	+
GWHAAZE00000005	CDS	61568800	61568994	+
GWHAAZE00000005	CDS	61571609	61571730	+
GWHAAZE00000005	CDS	61572145	61572257	+
GWHAAZE00000005	CDS	61572633	61572938	+
GWHAAZE00000005	CDS	61573950	61574120	+
GWHAAZE00000005	CDS	61574898	61574963	+
GWHAAZE00000005	CDS	61575967	61576017	+
GWHAAZE00000005	CDS	61576614	61576850	+
GWHAAZE00000005	CDS	61577234	61577512	+

Transcript Sequence
>GWHTAAZE019802 ATGCCTGGTGAAAAGTCATTGCATATAAACAACGGTACAGACGAATTACACACCAAAAAACGCAAACGAAAGCCCAAAATTCACGGAGACGCTTTTATTGGTTCAACCTTGTCAAAGGAATTTGAAAGCAAAGGCAGAAGGAAGAATGATTCCAGAAGAAACAAGTCCTCAAGCAACAAGTCTTCCTTTAGATGCTCTACCGGTGAAACACTGTCCTCAATTAGCCCCGTCGAAAATGTCAAATCTCGGAAGTTAAAACGAAAGGGAAAGCGAAAGAGGTCAAAGGATAGTTCTGCTGAGACTGATGAAGCTTCCCGCTTGCAAAGGAGGGCAAGGAACCTGATGATAAAAATGAAGTTTGAGCAGAACCTTATTGATGCTTACTCAGGGGAAGGTTGGAAGGGTCAAAGTCGAGAAAAGATTAGGCCAGAAAAAGAACTACAAAGAGCTATGAAACAGATACTGAAATGCAAGCTTGGAATCCGTGATGCCATACGTCAGTTGGATTCACTTAGCTCTGAAGGATGCATTGAAGACTCTGCAATTGCTCCTGATGGTTCTGTATATCACGAACATGTAAGCATGAAAACATCACATATGAACAAATATTCTGCGCTAAAATGCAAGCTGCGAGAAGCATTCCCGACAATGATATTATACTCTGTGATGGTACATGCAATTGTGCTTTTCACCAAAATGTCTAGATCCTCCATTATTGACGAAGATATTCCTCAAGGAGACGAAGCATGGTTTTGCAAATTTTGCGAGTGTAAGATGGATATATTGGATGCAATGAATGCACACACTGGGACCCACTTCTCCGTGGATAGTAACTGGCAGGATATCTTCAAGGAAGAAGCTGATTTGCCTGATGGTGGGGATGCTTTACTACATCAAGAAGAAGAATGGCCATCAGATGAGTCGGATGATGACGACTATGATCCAGAAAACTTTGATAATAGCTGTAATCAAAGCAGGGCCGAGTCTAAAGATAACGCTTCCGAATCAGAAAGTGCCTCTTCCAGCAGTTTATGCATACTCGAAGGTGACCTATTTTTTGAAGCCGATTCTGATGAGACAACAGATTGTGAAGTTTTAAGTGGTCGAAGACAACGAAGAGCCGTCGACTATAAGAAATTATATGATGAAATGTTTGGAAAGGATGCTCCTGTAAATGAACAAATTAGTGAAGACGAAGACTGGGGTCCTACTAAGAGGAGAAAGCGTAGAGAGAAGGAGTGTGATGCAGCTAGCACCCTTATGACTCTATGTGAAGAAAGTGAGAAGAAATGCCCAAATGAGAATAATACAGAAGAAAATGAACTTCCTTCTAAGGCTGTAAGGGACAACCTTTCGGAGCAGTTGGGTCTTGATTCTGAGAAGGTCAATAAATGGTTCAAAAATGCGCGATACCTAGCACTTAAAGCCAGGAAGCTAGGGAGAAGAAACTCTTTCACTGATATTAGTCCAAGAATTTCAAAGGAAGCAGCCGAATCAGAGAATGCAATGGAGAAACCTGCAGATCAAATGCTATGTAAGGACGATGTGGATCAAGCACTTGAGAGTTTGAACAAAAAGTTGCATGCGAGAAACAACTTTAAACTATTAACAAGTCCTTCAAAGAAACGGCACCACAAGGAACCTCTGCTTTGGTCTCCAATTAAAAATAAGGATGCTGAGGAGTTAGGGGATGATATGAGCTTGAAGCTTTTAAGAGAAAAGGCTAAGAGAGAGAAAAGAGTTAACTTTAATGCCATGGGAAACCATAATGCAGCAGTAGTAGTACAAGAAGAAGCCGAGGCCGAGGCAGAGATGGAGAGGCTCTGTAAAATCAAAAGCACGGTAGAGAAACTTCAGCAGGTTTTACTTGCACTTCCCAATCCCTCCACCTTTGTTCAACACTCTGTTATCTATGTTCCTATTGCCGAGCTAAGGGAGAAGAAAATATGA

Network for GWHGAAZE019780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	439	471	5.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.221
	SRR3591706	second leaf	2.491
	SRR3591707	mature leaf	3.627
	SRR3591708	Shoot apex	2.988
	SRR3591709	Stem	4.439
	SRR3591710	White floral bud	2.983
	SRR3591711	White flower	4.069
	SRR3591712	Green floral bud	2.954
	SRR3591713	Yellow flower	3.439
SRP173429	SRR8316895	Juvenile bud stage	2.124
	SRR8316896	Juvenile bud stage	1.973
	SRR8316897	Juvenile bud stage	0.793
	SRR8316894	Third green stage	1.698
	SRR8316900	Third green stage	3.025
	SRR8316901	Third green stage	3.024
	SRR8316898	Complete white stage	1.862
	SRR8316899	Complete white stage	4.663
	SRR8316903	Complete white stage	3.033
	SRR8316902	Silver flowering stage	1.474
	SRR8316904	Silver flowering stage	2.221
	SRR8316905	Silver flowering stage	1.080
	SRR8316906	Gold flowering stage	4.119
	SRR8316907	Gold flowering stage	3.959
	SRR8316908	Gold flowering stage	4.055
SRP132670	SRR6706286	Control	1.293
	SRR6706287	Light intensity 50%	1.556
	SRR6706288	Light intensity 20%	1.500
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.566
	CNS0095593	Slightly white alabastrum(diploid) 2	1.458
	CNS0095594	Slightly white alabastrum(diploid) 3	1.660
	CNS0095595	Whole white alabastrum(diploid) 2	1.291
	CNS0095596	Whole white alabastrum(diploid) 3	1.177
	CNS0095597	Whole white alabastrum(diploid) 4	1.678
	CNS0095598	Silvery flower (diploied) 1	2.591
	CNS0095599	Silvery flower (diploied) 2	1.026
	CNS0095600	Silvery flower (diploied) 3	3.485
	CNS0095601	Golden flower (diploid) 1	1.935
	CNS0095602	Golden flower (diploid) 2	4.067
	CNS0095603	Golden flower (diploid) 3	3.576
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.661
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.967
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.166
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.652
	CNS0095610	Silvery flower (tetraploid) 1	3.672
	CNS0095611	Silvery flower (tetraploid) 2	4.847
	CNS0095612	Silvery flower (tetraploid) 3	2.838
	CNS0095613	Golden flower (tetraploid) 1	2.156
	CNS0095614	Golden flower (tetraploid) 2	4.237
	CNS0095615	Golden flower (tetraploid) 3	3.244
CRA001975	CRR073297	Stem 1	2.871
	CRR073298	Stem 2	3.096
	CRR073299	Stem 3	1.893
	CRR073300	Leaf 1	2.391
	CRR073301	Leaf 2	1.809
	CRR073302	Leaf 3	0.994
	CRR073303	Juvenile bud 1	1.876
	CRR073304	Juvenile bud 2	1.814
	CRR073305	Juvenile bud 3	1.755
	CRR073306	Third green 1	0.741
	CRR073307	Third green 2	0.266
	CRR073308	Third green 3	0.680
	CRR073309	Second white 1	0.429
	CRR073310	Second white 2	0.983
	CRR073311	Second white 3	0.845
	CRR073312	Silver flowering 1	0.597
	CRR073313	Silver flowering 2	0.162
	CRR073314	Silver flowering 3	0.530
	CRR073315	Gold flowering 1	0.434
	CRR073316	Gold flowering 2	1.295
	CRR073317	Gold flowering 3	0.416
	CRR073318	Tawny withering 1	1.601
	CRR073319	Tawny withering 2	2.164
	CRR073320	Tawny withering 3	2.653