Gene detail

Detail information of GWHGAAZE019816

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001234474.1	4.71721E-84	verticillium wilt disease resistance protein precursor [Solanum lycopersicum]
COG	YP_004775215.1	7E-21	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	2E-34	Receptor-like protein 12 (Precursor)
trEMBL	tr\|Q94G62\|Q94G62_SOLLC	2E-84	Verticillium wilt disease resistance protein {ECO:0000313\|EMBL:AAK58681.2}
TAIR10	AT1G47890.1	8E-28	receptor like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	63053065	63054369	+
GWHAAZE00000005	mRNA	63053065	63054369	+
GWHAAZE00000005	exon	63053065	63054369	+
GWHAAZE00000005	CDS	63053065	63054369	+

Transcript Sequence
>GWHTAAZE019838 ATGAGAAATTCAGCCTTCATTCCCATTTTCAATATCACCATAATCACCATTTGTTGTGTAAGCATCGTTCCAATAAACGCCCAATGTTTGGAGGATCAAAGAAGTTTGTTGCTCCAATTGAAGAACACCCTCAAATTCAATTCTTCATATTCTACCAAGCTGGTTCAATGGAATCATCATAATAAAGATTGTTGCCTTTGGGAAGGCATCACTTGCAGCAAAGCTGGCCATGTTACTGGCTTAGACTTGAACCACGAATCAATCTTCGGTGGAATCGACAATTCAAGTAGTCTTTTCAGTCTCCGGTTCCTTCAGAGCTTGAATTTGGCTGACAACGACTTCTACTTTGCACCAATTCCATCCGCATTCATTAACCTTACTAGTTTGACGTACTTGGATTTGTCAAACTCTGGTTTTGGTGGGCAAATCCCAATTGAATTGTCTCAATTGACGAGGTTGGTTACTCTTGATCTTTCTGGTGTCTCATTCACTGATATCCCTTTGCTAAAACTTCCGACATTTGCGCAAAATGCCTTTCTGGATAATCCTCGGCTAGAACTCAATATTCCTCGGCTAGAACTCAAAAATCCAAATTTAAATATGTTTGTCCAGAATCTTACACAGCTTACTATACTCTATCTTGACGGTGTAGAGATATCAGCACAGGGACATGCTTGGGGCCAATCAATATCTTCCTGGTTGCCTAATTTGAGAGTGCTGAGTTTGTCATATTGTAATCTTTCAGGCCCTATTGATTCTTCACTTCTGAAACTTCCATTTCTTTCAGTGATTCGTCTCGATAATAACAATCTAAATGCTCCAGTTCCCGAGTTTCAAATGTCCAAAAATCTCACTTTCATAGACCTCTCTCATAACAATTTGTTGGGCCCATTCTCTTTCGCTCAATTTGAAGGTTTGGTGAATCTTGCATTTATTGATTTGGGATACAACTCATTTACGGGGAGGATTCCATCTTCTCTGTTTGGCCTCCCATCTTTGAAGCAATTGCTACTATACAACAACCATTTTGATGGTTCACTACCCCAAATTCCCAATGCATCTTCTTCAATGCTAGATATGCTTGAATTGCAAGGTAACAAGCTAGAAGGTGAAATTCCCTCATCCTTCTTTGACCTCAAAAGGCTTAATTTCCTCTCTCGTCATTCAACAATCTCAGCGCACTATACAGCTAGAAAATGTTCAAAACTTGTCAATCTCACCACTCTTGATCGTCATACAACAACTTGTCGATCGAAGCGGTGGCACCATTCGGCTTGCATCCATTACCAAAATTCAGTGCATTGA

Network for GWHGAAZE019816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	73	3.30E-08
PF00560.34	LRR_1	236	258	0.4

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.021
	SRR3591710	White floral bud	0.025
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.042
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.762
	SRR8316896	Juvenile bud stage	0.174
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.026
	SRR8316900	Third green stage	0.067
	SRR8316901	Third green stage	0.021
	SRR8316898	Complete white stage	0.092
	SRR8316899	Complete white stage	0.580
	SRR8316903	Complete white stage	0.300
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.125
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.878
	SRR8316907	Gold flowering stage	0.474
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.464
	SRR6706287	Light intensity 50%	0.416
	SRR6706288	Light intensity 20%	0.329
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.210
	CNS0095593	Slightly white alabastrum(diploid) 2	0.114
	CNS0095594	Slightly white alabastrum(diploid) 3	0.116
	CNS0095595	Whole white alabastrum(diploid) 2	0.380
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.069
	CNS0095598	Silvery flower (diploied) 1	1.864
	CNS0095599	Silvery flower (diploied) 2	1.570
	CNS0095600	Silvery flower (diploied) 3	0.261
	CNS0095601	Golden flower (diploid) 1	1.184
	CNS0095602	Golden flower (diploid) 2	0.565
	CNS0095603	Golden flower (diploid) 3	0.923
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.080
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.152
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.444
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.560
	CNS0095610	Silvery flower (tetraploid) 1	0.276
	CNS0095611	Silvery flower (tetraploid) 2	0.094
	CNS0095612	Silvery flower (tetraploid) 3	0.048
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.060
	CNS0095615	Golden flower (tetraploid) 3	0.067
CRA001975	CRR073297	Stem 1	0.449
	CRR073298	Stem 2	0.773
	CRR073299	Stem 3	0.186
	CRR073300	Leaf 1	0.269
	CRR073301	Leaf 2	0.296
	CRR073302	Leaf 3	0.118
	CRR073303	Juvenile bud 1	0.033
	CRR073304	Juvenile bud 2	0.048
	CRR073305	Juvenile bud 3	0.191
	CRR073306	Third green 1	0.075
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.123
	CRR073316	Gold flowering 2	0.401
	CRR073317	Gold flowering 3	0.032
	CRR073318	Tawny withering 1	0.188
	CRR073319	Tawny withering 2	1.018
	CRR073320	Tawny withering 3	0.229