Detail information of GWHGAAZE019927


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002319737.19.47174E-14hypothetical protein POPTR_0013s06420g [Populus trichocarpa]
Swissprottr|Q9FLS0|FB253_ARATH0.0000009F-box protein At5g07610
trEMBLtr|B9I663|B9I663_POPTR4E-14Uncharacterized protein {ECO:0000313|EMBL:EEE95660.1}
TAIR10AT5G07610.10.000004F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene6829635768297786-
GWHAAZE00000005mRNA6829635768297786-
GWHAAZE00000005exon6829773768297786-
GWHAAZE00000005exon6829635768297043-
GWHAAZE00000005five_prime_UTR6829773768297786-
GWHAAZE00000005five_prime_UTR6829701868297043-
GWHAAZE00000005CDS6829657768297017-
GWHAAZE00000005three_prime_UTR6829635768296576-
Transcript Sequence

Network for GWHGAAZE019927

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box44770.00044
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.706
SRR3591706second leaf0.637
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.297
SRR3591709Stem1.236
SRR3591710White floral bud1.294
SRR3591711White flower1.456
SRR3591712Green floral bud1.652
SRR3591713Yellow flower0.378
SRP173429 SRR8316895Juvenile bud stage 3.061
SRR8316896Juvenile bud stage 5.772
SRR8316897Juvenile bud stage 1.580
SRR8316894Third green stage 1.224
SRR8316900Third green stage 2.108
SRR8316901Third green stage 3.391
SRR8316898Complete white stage 2.767
SRR8316899Complete white stage 4.878
SRR8316903Complete white stage 2.331
SRR8316902Silver flowering stage0.904
SRR8316904Silver flowering stage2.412
SRR8316905Silver flowering stage0.497
SRR8316906Gold flowering stage 2.527
SRR8316907Gold flowering stage 1.415
SRR8316908Gold flowering stage 5.373
SRP132670SRR6706286Control1.937
SRR6706287Light intensity 50%2.181
SRR6706288Light intensity 20%1.663
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.395
CNS0095593Slightly white alabastrum(diploid) 22.352
CNS0095594Slightly white alabastrum(diploid) 33.020
CNS0095595Whole white alabastrum(diploid) 23.740
CNS0095596Whole white alabastrum(diploid) 32.076
CNS0095597Whole white alabastrum(diploid) 41.510
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 21.050
CNS0095600Silvery flower (diploied) 33.905
CNS0095601Golden flower (diploid) 11.253
CNS0095602Golden flower (diploid) 21.378
CNS0095603Golden flower (diploid) 31.936
CNS0095604Slightly white alabastrum(tetraploid) 12.427
CNS0095605Slightly white alabastrum(tetraploid) 22.940
CNS0095606Slightly white alabastrum(tetraploid) 32.379
CNS0095607Whole white alabastrum(tetraploid) 11.721
CNS0095608Whole white alabastrum(tetraploid) 21.473
CNS0095609Whole white alabastrum(tetraploid) 33.969
CNS0095610Silvery flower (tetraploid) 14.863
CNS0095611Silvery flower (tetraploid) 22.142
CNS0095612Silvery flower (tetraploid) 34.001
CNS0095613Golden flower (tetraploid) 11.086
CNS0095614Golden flower (tetraploid) 22.963
CNS0095615Golden flower (tetraploid) 32.832
CRA001975CRR073297Stem 11.366
CRR073298Stem 21.266
CRR073299Stem 30.794
CRR073300Leaf 11.567
CRR073301Leaf 20.974
CRR073302Leaf 30.960
CRR073303Juvenile bud 11.609
CRR073304Juvenile bud 20.911
CRR073305Juvenile bud 30.600
CRR073306Third green 10.192
CRR073307Third green 20.054
CRR073308Third green 30.133
CRR073309Second white 10.684
CRR073310Second white 20.908
CRR073311Second white 31.065
CRR073312Silver flowering 10.303
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.511
CRR073315Gold flowering 10.699
CRR073316Gold flowering 20.689
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.561
CRR073319Tawny withering 20.077
CRR073320Tawny withering 30.776