Gene detail

Detail information of GWHGAAZE019942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19906.1	1.2237E-160	unnamed protein product [Coffea canephora]
Swissprot	tr\|B9RXW0\|TPS7_RICCO	1E-138	Alpha-farnesene synthase
trEMBL	tr\|A0A068VGQ7\|A0A068VGQ7_COFCA	5E-161	Coffea canephora DH200=94 genomic scaffold, scaffold_774 {ECO:0000313\|EMBL:CDP19906.1}
TAIR10	AT4G16730.1	8E-72	terpene synthase 02

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	69530004	69531966	-
GWHAAZE00000005	mRNA	69530004	69531966	-
GWHAAZE00000005	exon	69530004	69530300	-
GWHAAZE00000005	exon	69530602	69530751	-
GWHAAZE00000005	exon	69530898	69531039	-
GWHAAZE00000005	exon	69531133	69531351	-
GWHAAZE00000005	exon	69531635	69531966	-
GWHAAZE00000005	CDS	69531635	69531966	-
GWHAAZE00000005	CDS	69531133	69531351	-
GWHAAZE00000005	CDS	69530898	69531039	-
GWHAAZE00000005	CDS	69530602	69530751	-
GWHAAZE00000005	CDS	69530004	69530300	-

Transcript Sequence
>GWHTAAZE019964 ATGTTTGTAAGATTCGTGGATGGAACGGGTAAATTCTCGAAAGGCGCACTCTCCAACACGAAAGCCATTCTCGAACTTTATGAAGCTTCCCATCTAGCCTTAGAAGATGAACACATCTTAAATGAGGCCAGCTTGAGCACAGCAAATATTCTCAAAACCTCCCATGCTCTGAAACTTCCTTTGCAATGGAGTGCGGAGTGGTATAATGTCAAAAGACAGATCCAAATTCTCGGCAAAGAGGATAACACAAACAACGTTTTGCTCAAATTAGCAAAACTTAACTTCAACATGGTTCAAGCCGCACACCAAAAAGATCTCAGAGAGATATTAAGGTGGTGGAGGAACCTTGGACTTGCAGAATCTTTGAGCTTTACTAGGAACCGAATTGTTGAAAGTTACTTATGGGCTGTGGGAGTTGCTTTTGAGCCTCGTGATGGAAGTCTTAGAAAATGGCTTGCCAAAGTCACTAAGATGATAATAATAATTGATGATATCTACGATGTTTATGGTTCGTTGGCAGAATTAGAGCACTTCACTGCAGCTGTTAATAGGTGGGATACTAAGGAAATTGAAATGCTACCTGATTGTATGAAGATTTGTTTCCAAACCCTGGATGAAGTAACCAATGAGATTTCTTTCGAAATTCAGAAAGAAAAGGGTTGGAATTTGGTGCTACCTTATTTACAACAAGTGTGGGCAGATTTTTGCAAAGCATTGCTTGTGGAAGCGCAGTGGTACAACAAGTGTTATACACCTTCACTTCAAGAGTATCTAGATAATGGGTGGATATCCTCATCTGGCCCGGTTCTTTCTCTTCACGTACTCTTTTCAGTAACACATGAGGCGGAACTAGAAAGAGGCGATGCCCCTTCATCAATTCTGTGTTTTATGAGGGAAGCAAACGTATCAGAAGAGGTAGCTCGAAACCACATTAGAAGTGTAATAAGCAATACATGGAAGAAAATCAACAAAGAGTGCATAATTCAATCTCCATTGTTCAAGCCATTTGTGAAGTATACAACAAACACAGCTCGAGTGACTCATTTCATTTACCAAAATGGAGACGGGTTCGGTGTTCAAGACCGTGAAACTCGAGATCAAATCTGGTCCCTATTTGTGGAACCTCTTGTACTCGACTAA

Network for GWHGAAZE019942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.22	Terpene_synth	2	56	1.20E-09
PF03936.17	Terpene_synth_C	88	279	7.90E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14173	AFS1	Biosynthesis of secondary metabolites	map01110
K14173	AFS1	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0010333	molecular_function	terpene synthase activity
GO:0016829	molecular_function	lyase activity
GO:0000287	molecular_function	magnesium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.371
	SRR3591706	second leaf	0.235
	SRR3591707	mature leaf	1.942
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.160
	SRR3591710	White floral bud	52.333
	SRR3591711	White flower	990.741
	SRR3591712	Green floral bud	0.069
	SRR3591713	Yellow flower	985.971
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.060
	SRR8316905	Silver flowering stage	0.064
	SRR8316906	Gold flowering stage	38.101
	SRR8316907	Gold flowering stage	7.625
	SRR8316908	Gold flowering stage	359.362
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.019
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.133
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.298
	CNS0095601	Golden flower (diploid) 1	0.194
	CNS0095602	Golden flower (diploid) 2	0.188
	CNS0095603	Golden flower (diploid) 3	0.388
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.067
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.065
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	49.128
	CNS0095611	Silvery flower (tetraploid) 2	57.623
	CNS0095612	Silvery flower (tetraploid) 3	445.521
	CNS0095613	Golden flower (tetraploid) 1	128.471
	CNS0095614	Golden flower (tetraploid) 2	40.480
	CNS0095615	Golden flower (tetraploid) 3	109.605
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.006
	CRR073309	Second white 1	0.175
	CRR073310	Second white 2	0.470
	CRR073311	Second white 3	0.396
	CRR073312	Silver flowering 1	0.360
	CRR073313	Silver flowering 2	0.132
	CRR073314	Silver flowering 3	0.129
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000