Gene detail

Detail information of GWHGAAZE019963

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265606.1	0	PREDICTED: ethanolamine-phosphate cytidylyltransferase [Vitis vinifera]
COG	YP_004672440.1	4E-24	hypothetical protein SNE_A20720
Swissprot	tr\|Q9ZVI9\|PECT1_ARATH	0	Ethanolamine-phosphate cytidylyltransferase
trEMBL	tr\|F6I6P3\|F6I6P3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62611.1}
TAIR10	AT2G38670.1	1E-144	phosphorylethanolamine cytidylyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	70864845	70874881	+
GWHAAZE00000005	mRNA	70864845	70874881	+
GWHAAZE00000005	exon	70864845	70865197	+
GWHAAZE00000005	exon	70866447	70866682	+
GWHAAZE00000005	exon	70867321	70867484	+
GWHAAZE00000005	exon	70869017	70869088	+
GWHAAZE00000005	exon	70870317	70870384	+
GWHAAZE00000005	exon	70870763	70870883	+
GWHAAZE00000005	exon	70873014	70873079	+
GWHAAZE00000005	exon	70873177	70873299	+
GWHAAZE00000005	exon	70874364	70874881	+
GWHAAZE00000005	CDS	70864845	70865197	+
GWHAAZE00000005	CDS	70866447	70866682	+
GWHAAZE00000005	CDS	70867321	70867484	+
GWHAAZE00000005	CDS	70869017	70869088	+
GWHAAZE00000005	CDS	70870317	70870384	+
GWHAAZE00000005	CDS	70870763	70870883	+
GWHAAZE00000005	CDS	70873014	70873079	+
GWHAAZE00000005	CDS	70873177	70873299	+
GWHAAZE00000005	CDS	70874364	70874435	+
GWHAAZE00000005	three_prime_UTR	70874436	70874881	+

Transcript Sequence
>GWHTAAZE019985 ATGGAATTTGATAGCAACAGTTGGATTCGAGATGGGGTATACTACTACCCGCATCTATTCGGTGGGATTATGCTCACCGCAGCCTTGCTTGGGTTGTCCACGAGCTATTTTGGTGGGATAATTGTACCTACAATGCCGTATAATTTGTCGGATTTGGGGCTTTTTCAAAGGAAGAAATATGGGAAGAAACGCGTTCGTGTTTATATGGATGGGTGCTTTGATCTCATGCATTATGGTCATGCAAATGCTTTGAGGCAAGCCAAGGCTTTGGGCGATGAATTGGTGGTTGGAGTTGTGAGTGATGAAGAGATCATAGCCAATAAAGGTCCCCCTGTTCTATCTATGGAAGAAAGGCTAGTTCTTGTTAGCGGATTGAAATGGGTTGATGAAGTTATTGCAAATGCTCCTTATGAGATTACTGAAGAGTTTATGAATCGTCTCTTCAATGAGCATAAGATTGACTATATTATACATGGCGATGATCCTTGCCTACTTCCTGATGGAACTGATGCTTACGCGCTAGCAAAAAAAGCCGGTCGTTACAAGCAGATTAAACGCACTGAAGGTGTCTCCAGCACAGATATTGTAGGAAGGATACTTGCTTCTATGAAGGATGCAAAAGTCGCTGAAGATAGCAATAAGTTACCTCTTCACGGTGAACCTGACAAGATGAACAAAACTCAAGGGGAGAAAAGTCAGGCTTCTCATTTTCTACCTACCTCAAGACGAATTGTGCAATTTTCAAATGGCAAGGGACCCGGACCAAATGCCCGTGTAGTGTACATTGATGGAGCATTTGATCTTTTTCATGCAGGACATGTTGAGATCCTGAAGAGTGCCAGGCAACTTGGAGATTTTCTACTTGTTGGTATTTATACTGACCAGACAGTCAGCGAGCGCCGAGGGACTCACTTTCCACTTATGCATCTCCACGAACGGAGTCTTAGTGTACTGGGCTGCCGTTATGTTGATGAAGTCATCATTGGAGCACCTTGGGAAATAACACATGACATGATGACAACTTTTAACATCTCTTTGGTGGTGCATGGGACAGTTGCCGAGAGCAACTCTTTGTTGAATGGAGAGAAAGATCCTTACGCAGTTCCCAAGAGCAGGGGAATGTTCCGGATGCTTGAGAGCCCGAAAGCTATCACTACCACTTCAGTAGCTCAAAGGATAATTGCAAATCACGACCTCTATATGAAACGCAATGCCAAGAAGGAAGAAAGCGAGAAGAAATATTACGCGCAGAAGAAATACGTGTCGGGGGATTGAAAACTCTCCGAGCGTTGACTTCGACATTCGTTGACTTATCAGCTTTTGCTTTTTTGGCTTTTTTTGGCTATTCAAGATAGAAATCACCCAAACGTACTTTTTGAAGGATTAGAAGAAAAGAGGGGAAATTATGTGTAGAAGGATAATACCCACCTAGTACAAATGTCTCTTGTAATAGCATTTTCAGTTGGACCCTTTTTTTTGTTGTTGTCCATGATTATTTATATTAAAGTATATAGAGCACAGTTATTATGTACTGTTAATAATATGCTAACATTGAGAAACTATAAGGCACTTAATTTATGCAAGCTTGCTGACTTCTTCATTTTGTAAAGCCATTTATTTCTGTGTTTTTGAAGATATGGAAATGTTGTTTTTAACATTTTTTTTTCAAGGTTGCAGTTAACGTCATTTCATAGAGTACATGCACAAGCGAGTTCATTTTA

Network for GWHGAAZE019963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01467.27	CTP_transf_like	68	196	3.60E-24
PF01467.27	CTP_transf_like	261	351	1.20E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00967	PCYT2	Metabolic pathways	map01100
		Glycerophospholipid metabolism	map00564
		Phosphonate and phosphinate metabolism	map00440

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.395
	SRR3591706	second leaf	21.554
	SRR3591707	mature leaf	20.252
	SRR3591708	Shoot apex	25.437
	SRR3591709	Stem	44.673
	SRR3591710	White floral bud	124.733
	SRR3591711	White flower	36.051
	SRR3591712	Green floral bud	88.260
	SRR3591713	Yellow flower	33.316
SRP173429	SRR8316895	Juvenile bud stage	36.459
	SRR8316896	Juvenile bud stage	60.291
	SRR8316897	Juvenile bud stage	27.889
	SRR8316894	Third green stage	20.595
	SRR8316900	Third green stage	61.687
	SRR8316901	Third green stage	64.063
	SRR8316898	Complete white stage	18.406
	SRR8316899	Complete white stage	44.740
	SRR8316903	Complete white stage	30.861
	SRR8316902	Silver flowering stage	16.183
	SRR8316904	Silver flowering stage	22.099
	SRR8316905	Silver flowering stage	10.447
	SRR8316906	Gold flowering stage	30.106
	SRR8316907	Gold flowering stage	33.355
	SRR8316908	Gold flowering stage	32.562
SRP132670	SRR6706286	Control	55.798
	SRR6706287	Light intensity 50%	55.097
	SRR6706288	Light intensity 20%	56.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.352
	CNS0095593	Slightly white alabastrum(diploid) 2	55.606
	CNS0095594	Slightly white alabastrum(diploid) 3	68.555
	CNS0095595	Whole white alabastrum(diploid) 2	100.696
	CNS0095596	Whole white alabastrum(diploid) 3	112.616
	CNS0095597	Whole white alabastrum(diploid) 4	143.433
	CNS0095598	Silvery flower (diploied) 1	27.059
	CNS0095599	Silvery flower (diploied) 2	32.306
	CNS0095600	Silvery flower (diploied) 3	31.242
	CNS0095601	Golden flower (diploid) 1	29.324
	CNS0095602	Golden flower (diploid) 2	33.203
	CNS0095603	Golden flower (diploid) 3	32.286
	CNS0095604	Slightly white alabastrum(tetraploid) 1	86.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.309
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.577
	CNS0095607	Whole white alabastrum(tetraploid) 1	153.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	179.023
	CNS0095609	Whole white alabastrum(tetraploid) 3	94.284
	CNS0095610	Silvery flower (tetraploid) 1	29.399
	CNS0095611	Silvery flower (tetraploid) 2	32.255
	CNS0095612	Silvery flower (tetraploid) 3	39.205
	CNS0095613	Golden flower (tetraploid) 1	25.488
	CNS0095614	Golden flower (tetraploid) 2	24.749
	CNS0095615	Golden flower (tetraploid) 3	40.997
CRA001975	CRR073297	Stem 1	59.540
	CRR073298	Stem 2	55.168
	CRR073299	Stem 3	68.151
	CRR073300	Leaf 1	71.853
	CRR073301	Leaf 2	50.295
	CRR073302	Leaf 3	39.377
	CRR073303	Juvenile bud 1	50.489
	CRR073304	Juvenile bud 2	41.501
	CRR073305	Juvenile bud 3	34.065
	CRR073306	Third green 1	50.947
	CRR073307	Third green 2	47.155
	CRR073308	Third green 3	48.952
	CRR073309	Second white 1	20.415
	CRR073310	Second white 2	27.147
	CRR073311	Second white 3	27.339
	CRR073312	Silver flowering 1	39.470
	CRR073313	Silver flowering 2	36.530
	CRR073314	Silver flowering 3	28.343
	CRR073315	Gold flowering 1	26.401
	CRR073316	Gold flowering 2	18.021
	CRR073317	Gold flowering 3	12.900
	CRR073318	Tawny withering 1	41.741
	CRR073319	Tawny withering 2	35.239
	CRR073320	Tawny withering 3	36.057