Detail information of GWHGAAZE019964


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009771255.10PREDICTED: isoamylase 1, chloroplastic [Nicotiana sylvestris]
COGYP_008105.13E-141isoamylase
Swissprottr|O04196|ISOA1_ARATH0Isoamylase 1, chloroplastic (Precursor)
trEMBLtr|A0A068VDG2|A0A068VDG2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_173 {ECO:0000313|EMBL:CDP17693.1}
TAIR10AT2G39930.10isoamylase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7088494170903101-
GWHAAZE00000005mRNA7088494170903101-
GWHAAZE00000005exon7090291070903101-
GWHAAZE00000005exon7090272270902829-
GWHAAZE00000005exon7090060570900690-
GWHAAZE00000005exon7089413770894208-
GWHAAZE00000005exon7089391670894042-
GWHAAZE00000005exon7089367170893757-
GWHAAZE00000005exon7089197670892068-
GWHAAZE00000005exon7089132370891481-
GWHAAZE00000005exon7089080870890891-
GWHAAZE00000005exon7088717770887259-
GWHAAZE00000005exon7088696070887077-
GWHAAZE00000005exon7088494170885201-
GWHAAZE00000005CDS7090291070903101-
GWHAAZE00000005CDS7090272270902829-
GWHAAZE00000005CDS7090060570900690-
GWHAAZE00000005CDS7089413770894208-
GWHAAZE00000005CDS7089391670894042-
GWHAAZE00000005CDS7089367170893757-
GWHAAZE00000005CDS7089197670892068-
GWHAAZE00000005CDS7089132370891481-
GWHAAZE00000005CDS7089080870890891-
GWHAAZE00000005CDS7088717770887259-
GWHAAZE00000005CDS7088696070887077-
GWHAAZE00000005CDS7088494170885201-
Transcript Sequence

Network for GWHGAAZE019964

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00128.25Alpha-amylase46792.70E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01214ISA, treX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.663
SRR3591706second leaf8.720
SRR3591707mature leaf5.674
SRR3591708Shoot apex9.514
SRR3591709Stem28.373
SRR3591710White floral bud3.625
SRR3591711White flower3.228
SRR3591712Green floral bud7.040
SRR3591713Yellow flower2.475
SRP173429 SRR8316895Juvenile bud stage 6.884
SRR8316896Juvenile bud stage 8.488
SRR8316897Juvenile bud stage 3.195
SRR8316894Third green stage 4.002
SRR8316900Third green stage 11.011
SRR8316901Third green stage 9.622
SRR8316898Complete white stage 1.560
SRR8316899Complete white stage 7.565
SRR8316903Complete white stage 2.383
SRR8316902Silver flowering stage0.658
SRR8316904Silver flowering stage0.541
SRR8316905Silver flowering stage0.525
SRR8316906Gold flowering stage 1.209
SRR8316907Gold flowering stage 1.632
SRR8316908Gold flowering stage 1.577
SRP132670SRR6706286Control8.270
SRR6706287Light intensity 50%9.773
SRR6706288Light intensity 20%11.317
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.119
CNS0095593Slightly white alabastrum(diploid) 213.096
CNS0095594Slightly white alabastrum(diploid) 38.031
CNS0095595Whole white alabastrum(diploid) 28.673
CNS0095596Whole white alabastrum(diploid) 38.898
CNS0095597Whole white alabastrum(diploid) 47.565
CNS0095598Silvery flower (diploied) 15.676
CNS0095599Silvery flower (diploied) 27.151
CNS0095600Silvery flower (diploied) 32.930
CNS0095601Golden flower (diploid) 14.441
CNS0095602Golden flower (diploid) 23.052
CNS0095603Golden flower (diploid) 33.501
CNS0095604Slightly white alabastrum(tetraploid) 111.372
CNS0095605Slightly white alabastrum(tetraploid) 210.024
CNS0095606Slightly white alabastrum(tetraploid) 318.055
CNS0095607Whole white alabastrum(tetraploid) 17.067
CNS0095608Whole white alabastrum(tetraploid) 24.377
CNS0095609Whole white alabastrum(tetraploid) 314.423
CNS0095610Silvery flower (tetraploid) 11.754
CNS0095611Silvery flower (tetraploid) 22.939
CNS0095612Silvery flower (tetraploid) 31.875
CNS0095613Golden flower (tetraploid) 10.610
CNS0095614Golden flower (tetraploid) 20.856
CNS0095615Golden flower (tetraploid) 30.073
CRA001975CRR073297Stem 114.585
CRR073298Stem 214.256
CRR073299Stem 313.962
CRR073300Leaf 117.062
CRR073301Leaf 217.049
CRR073302Leaf 313.665
CRR073303Juvenile bud 114.364
CRR073304Juvenile bud 29.052
CRR073305Juvenile bud 314.575
CRR073306Third green 11.958
CRR073307Third green 20.949
CRR073308Third green 31.057
CRR073309Second white 10.305
CRR073310Second white 20.359
CRR073311Second white 30.415
CRR073312Silver flowering 10.169
CRR073313Silver flowering 20.371
CRR073314Silver flowering 30.000
CRR073315Gold flowering 18.233
CRR073316Gold flowering 214.338
CRR073317Gold flowering 36.070
CRR073318Tawny withering 18.090
CRR073319Tawny withering 29.198
CRR073320Tawny withering 311.689