Gene detail

Detail information of GWHGAAZE020021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI23976.3	1.14177E-56	unnamed protein product [Vitis vinifera]
Swissprot	tr\|O04660\|GLR21_ARATH	2E-46	Glutamate receptor 2.1 (Precursor)
trEMBL	tr\|A5BU55\|A5BU55_VITVI	9E-57	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}
TAIR10	AT5G27100.1	8E-42	glutamate receptor 2.1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	73368601	73369779	+
GWHAAZE00000005	mRNA	73368601	73369779	+
GWHAAZE00000005	exon	73368601	73368826	+
GWHAAZE00000005	exon	73368978	73369328	+
GWHAAZE00000005	exon	73369442	73369515	+
GWHAAZE00000005	exon	73369693	73369779	+
GWHAAZE00000005	CDS	73368601	73368826	+
GWHAAZE00000005	CDS	73368978	73369328	+
GWHAAZE00000005	CDS	73369442	73369515	+
GWHAAZE00000005	CDS	73369693	73369779	+

Transcript Sequence
>GWHTAAZE020043 ATGACATCAATGCAATCGAGCTTTGTAATCGATCTTGGAAATCATGCTCAAGTCCCCATTATTTCATTCAGTGTAACAAATCCTTTCTTTTCATCACTTAGAAGCGAATATTTTGTTCAAGCAACCCTAAATGATTCATCTCAAGTGCAAGCTATAACCGCTCTTATTGAAGCTTTTGGATGGAGAAATGTAGTGCCCATATATGCAGATGAAGATTTTGGAAAAGATTATCTAGCCTCGCGAGTGTTGAATAAAGCTCAAGAAGTTGGAATGATGACTGAAGGGTATGTATGGATAGTAAGTGATGGAATCACTAATCCCTTGAATTCGATGGGTACTACTTTAGTAGGTTCTTTCAAAGGTGTTATAGGTGTAAAACCTTATGTTCCGAAAAGTAGAATGCTTAACAATTTTACACTTCGTTGGGAAGGGAAATCCTCGAAAGATGTTAATGTTGATTTATATGGGCTATGGGCATCGATGCTACTACAAAGATCGGCAATGGCGATTGAAAAGGTTGGGTATACAAACAACAATTTCAAGAAGATGAATTCTTCAAGAAACTCGGTGAATTTAGGTAATGGGGAGAGAGTGATTGGATTTTGGACAGCAAAACATGGGATTGTGAAGGAATTAAATTCAAAGGAAAAGACGCTGAGGTCAGTAATGGCAACATTACCATATGTTGTTCCTTTTGAGTACATTCCTTTTGCAAAGCCCGATGGGAGCGCATGGTAG

Network for GWHGAAZE020021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0113
CFinderModule0238

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01094.29	ANF_receptor	2	76	7.20E-17
PF01094.29	ANF_receptor	79	152	1.10E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.149
	SRR8316897	Juvenile bud stage	0.145
	SRR8316894	Third green stage	0.070
	SRR8316900	Third green stage	0.131
	SRR8316901	Third green stage	0.130
	SRR8316898	Complete white stage	0.064
	SRR8316899	Complete white stage	0.132
	SRR8316903	Complete white stage	0.003
	SRR8316902	Silver flowering stage	0.211
	SRR8316904	Silver flowering stage	0.717
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	2.042
	SRR8316907	Gold flowering stage	1.103
	SRR8316908	Gold flowering stage	2.562
SRP132670	SRR6706286	Control	0.076
	SRR6706287	Light intensity 50%	0.071
	SRR6706288	Light intensity 20%	0.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.028
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.061
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.070
	CNS0095601	Golden flower (diploid) 1	0.003
	CNS0095602	Golden flower (diploid) 2	0.471
	CNS0095603	Golden flower (diploid) 3	0.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.138
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	0.263
	CNS0095611	Silvery flower (tetraploid) 2	0.447
	CNS0095612	Silvery flower (tetraploid) 3	1.052
	CNS0095613	Golden flower (tetraploid) 1	0.626
	CNS0095614	Golden flower (tetraploid) 2	1.622
	CNS0095615	Golden flower (tetraploid) 3	1.925
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.025
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.029
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.036
	CRR073312	Silver flowering 1	0.050
	CRR073313	Silver flowering 2	0.096
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.023
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000