Gene detail

Detail information of GWHGAAZE020042

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI24055.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q6Z2W3\|ARFE_ORYSJ	Auxin response factor 5
trEMBL	tr\|V7C4C0\|V7C4C0_PHAVU	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT5G20730.2	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	74561960	74574146	+
GWHAAZE00000005	mRNA	74561960	74574146	+
GWHAAZE00000005	exon	74561960	74562134	+
GWHAAZE00000005	exon	74562600	74562709	+
GWHAAZE00000005	exon	74565749	74565847	+
GWHAAZE00000005	exon	74565936	74565992	+
GWHAAZE00000005	exon	74566475	74566630	+
GWHAAZE00000005	exon	74566975	74567059	+
GWHAAZE00000005	exon	74567530	74567620	+
GWHAAZE00000005	exon	74568138	74568302	+
GWHAAZE00000005	exon	74568436	74568558	+
GWHAAZE00000005	exon	74569098	74569173	+
GWHAAZE00000005	exon	74569574	74569715	+
GWHAAZE00000005	exon	74570450	74570877	+
GWHAAZE00000005	exon	74571190	74572299	+
GWHAAZE00000005	exon	74572621	74572811	+
GWHAAZE00000005	exon	74573578	74574146	+
GWHAAZE00000005	five_prime_UTR	74561960	74562076	+
GWHAAZE00000005	CDS	74562077	74562134	+
GWHAAZE00000005	CDS	74562600	74562709	+
GWHAAZE00000005	CDS	74565749	74565847	+
GWHAAZE00000005	CDS	74565936	74565992	+
GWHAAZE00000005	CDS	74566475	74566630	+
GWHAAZE00000005	CDS	74566975	74567059	+
GWHAAZE00000005	CDS	74567530	74567620	+
GWHAAZE00000005	CDS	74568138	74568302	+
GWHAAZE00000005	CDS	74568436	74568558	+
GWHAAZE00000005	CDS	74569098	74569173	+
GWHAAZE00000005	CDS	74569574	74569715	+
GWHAAZE00000005	CDS	74570450	74570877	+
GWHAAZE00000005	CDS	74571190	74572299	+
GWHAAZE00000005	CDS	74572621	74572811	+
GWHAAZE00000005	CDS	74573578	74573710	+
GWHAAZE00000005	three_prime_UTR	74573711	74574146	+

Transcript Sequence
>GWHTAAZE020064 TTGTTTTGAATTAGTTCAAGATTTTATACTGTATTTTCTTTTCTCGCCGGAGCTGATGAAACTCCGGTGAGATTCTGACGGTGGTGGGTCGGATAAATAGTAGCCGGAATTAGTCCAATGAAGATGCCTGGAAACGTTGCCGGAGCTTCTCCGGCGACGGCCAACCCCGGCGAAGGAGAAAAGAACATTAACCCGGAGCTATGGCAAGCTTGTGCCGGTCCACTGGTCAACTTACCGGCGGCTGGGACCCACGTGGTCTACTTCCCTCAAGGCCATAGTGAACAGGTTGCCGCGTCCATGAAGAAGGATGTTGATGCTCAAATTCCAAACTACCCAAATCTTCCTTCAAAGCTATTATGCCAACTTCACAATGTCACATTACATGCCGACCTAGAAACGGATGAAGTCTATGCTCAAATGACACTCCAGCCTGTTCCTTCGTTTGACAAGGATTCATTGTTAAGATCGGACCTGTCAATGAAGTCAAATAAACCACAAACAGAGTTCTTCTGTAAAACCTTGACCGCAAGCGATACAAGTACTCATGGAGGATTTTCTGTACCTCGCCGTGCAGCAGAGAAAATTTTCCCCGCCCTTGATTTCTCAATGCAACCACCAGCTCAAGAACTTGTGGCCAAGGATTTGCACGATAGTGTATGGACGTTTCGACATATCTACCGTGGACAACCAAAACGTCACTTGCTTACGACTGGATGGAGCCTCTTTGTTAGCGGAAAGAGGCTTATCGCTGGTGACTCGGTCTTATTTATCAGGGATGAAAAGCAGCAACTTCTCTTGGGCATCAGAAGGGCTAATCGGCAACCCCCAAATTTATCCTCATCAGTGTTGTCAAGTGATAGTATGCATATCGGAATCTTAGCCGCAGCTGCCCATGCAGCTGCAAATAACAGCCCCTTCACCATTTTTTACAATCCAAGGGCTAGTCCATCGGAATTTGTTATTCCTTTAGCAAAGTACTACAAGGCAGTGTGCAGCCACCAAATCTCGCTTGGCATGCGTTTTCGGATGATGTTTGAGACCGAAGAATCAGGGACAAGAAGGTATATGGGCACAATTACAGGTATCAGCGACCTTGATGCCATAAGATGGAAGAACTCGCAATGGCGTAATTTGCAGGTTGGCTGGGATGAGTCAACTGCTGGTGAAAGGCGAAACCGGGTGTCAATTTGGGAGATTGAACCAGTTACTGCCCCTTTTTTCATCTGCCCAACCCCACCCTTTTTCAGATCAAAGCGTCCAAGACAACCCGGAATGCCAGATGATGAATCTTCCGATCTTGATAGCATATTCAAACGAACCATGCCTTGGCTCAGTGATGACATATGCATGAAGGATCCGCAGTCTCTCGGCCCAGGCCTAAGCTTAGTCCAATGGATGAACATGCAGCAGCACCAAAACTCCACGACAATGACCAACTCGGTCCAGCCCAACTACCTTCACTCTTTACCTGGATCGGTTCTTCAAAACCTAGCTGGTGGGCCTGGGCCTGACCTTTCACGCCAGCTAGGCTTGTCGGGTCCACCCCAAATACCTCAGCAAACCAACTTACAGTTCAATTCCCAAAGGCCGAGTCAACAAGCCCAAAATCTTGACCAATTCCAAAAGATGGCTGCCAACCCGGTGAACCCGTTGGGCTCGATTTTGCAGCCTCAGCAACAGATGGGACAAAATTTGATGATTCAAACGAAGCTTCATCAGCAACAACAAACGCTTTTGGCTCAGCAATCTTCTCATCAACAGGCTAATCAACTGACCCAACTTCAAGATCATCAACAGAAACAGATGCTCGATGCGTCTAATCAGAGCTTTCCTAGGTCAATAACAAATACTACCCAAATGATGGAAATGCCTCAGTCTCAGTCTCACGTTCATTTTGCCCATCAACCCATTCAACAGAACCTTCAACAGCAGCCTGCCATGCTGCCCGAGCTGCCCAGTCGTGTGGGACCTGCGCAAATCCCGACAAGCAATCAACTCTCTACAGCAGGCAGCAGCTTATTGACTGGGGCTGCAGGTGGAGGCCAAGGCCAATCAGGGATTACTGATGACATTCCCTCTTGTTCGACCTCGCCTTCAGCCAATAATAGCCCGAGTTTAAATCTGCCAACAATGAATGGTAGGGCCCAACGAGGCATGGGTATGGGTGATGAGATAGCTCAGTCTTCTGCGAATCTCTTGAGTTCAAATGGGCTGGAAACTGTTTCCTCGAATGTGAACTTTGTTAAAGATTTGCAGCAAAAACCCGATATTAAGCCTTTAATGAATAACTCCAAGAATCCAAGCCAAGGATTCTTGGCCCCACAAACGTACTTGAATACCACCGGGATCCAAATGGACTACTTGGACAGTTCATCTTCAGCAACTTCGGTTTGTCTTTCTCAAAACGACGTTCATTTGCAGCAAAACACCAACCCAATGTGTTTCAATTCGCAGTCTATGATGTTTAGAGACGTTAACCAAGAAGTGGAAATTCAAGGGGACCCAAGACATAATATTTCGTTTGGGGCTAATAACATTGAGAGCCAATTGGGGATGCCGGTGATTAATGACCCTTTGATCACGAAGGGGGGAATGGTGGAATCGGGCAAGGATTTCTCTAACAATGGTATGCTTTCGAGCTATGAAAATCCTAAAGAAGCTCAGCCAGAGCTTTCATCATCAATGGTTTCACAGTCTTTTGGAGTACCCGATATAACGTTCAATTCGATTGATTCTGCTATAAATGATAATAGCTTCTTGAACCGGGGTGCGTGGGTCCCACCCCCGCAGTTTCAGCGTTTGAGGACTTATACCAAGGTGTATAAGCGTGGAGCTGTTGGAAGATCGATTGATATAACCCGTTATTCAGGCTATGAGGAGCTTAAACAGGATCTCGCTAGAAGGTTTGGTATAGAGGGACAGCTTGAGGATCGACAGAGAGTTGGATGGAAACTTGTGTACGTTGATCATGAGAATGATGTTCTTCTAGTTGGGGATGACCCTTGGGAGGAGTTTGTGAACTGTGTTCGTTGCATTAAGATTCTTTCGCCTCAAGAAGTGCAACAAATGAGCTTGGATGGAGATTTCGGCAATAATGTTCTTCCAAATCAAGCTTGTAGCAGCTCCGATGGTGGAATGTAAATTAATCGGCTAAATTTCGTCGTCCTCATTCTTCCAAGTGGGAAACTTCACTAAATACTATTACTAGGTAATCTATCCTTACAATCTCCCTAATTTCATAAATATGACACTCGCCATGCTAAAACGTCCATGGTTATGAGGTAAAGAAATGACCCTTTTAGCCATTAAAGCTTTTGGTGAGAATGGGATGAAAGAAGATTGATTCAAATTACCCACCTGGTAAATGTGAGATCAATACCACACCCCAACCCCAAGCCCCACACACCTCACTTTTTCTTTAAAATTTATCCCACTAAGTGTAATGTAGAAAGTTAAGAAAGAAGTATTGGAAACTTGTATTGGCTTAGTTGAGTGTATAGATGATGATCATATGTGTAGACTTCTATCCTTTTTAGTCCCATGAATGAATGAATGCATTATTATATTGCTCTGGTCA

Network for GWHGAAZE020042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	131	232	4.50E-20
PF06507.14	Auxin_resp	257	340	3.70E-34
PF02309.17	AUX_IAA	896	981	3.50E-07

Protein Sequence

>GWHPAAZE020053
MKMPGNVAGASPATANPGEGEKNINPELWQACAGPLVNLPAAGTHVVYFPQGHSEQVAASMKKDVDAQIPNYPNLPSKLLCQLHNVTLHADLETDEVYAQMTLQPVPSFDKDSLLRSDLSMKSNKPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPAQELVAKDLHDSVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFIRDEKQQLLLGIRRANRQPPNLSSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYYKAVCSHQISLGMRFRMMFETEESGTRRYMGTITGISDLDAIRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPTPPFFRSKRPRQPGMPDDESSDLDSIFKRTMPWLSDDICMKDPQSLGPGLSLVQWMNMQQHQNSTTMTNSVQPNYLHSLPGSVLQNLAGGPGPDLSRQLGLSGPPQIPQQTNLQFNSQRPSQQAQNLDQFQKMAANPVNPLGSILQPQQQMGQNLMIQTKLHQQQQTLLAQQSSHQQANQLTQLQDHQQKQMLDASNQSFPRSITNTTQMMEMPQSQSHVHFAHQPIQQNLQQQPAMLPELPSRVGPAQIPTSNQLSTAGSSLLTGAAGGGQGQSGITDDIPSCSTSPSANNSPSLNLPTMNGRAQRGMGMGDEIAQSSANLLSSNGLETVSSNVNFVKDLQQKPDIKPLMNNSKNPSQGFLAPQTYLNTTGIQMDYLDSSSSATSVCLSQNDVHLQQNTNPMCFNSQSMMFRDVNQEVEIQGDPRHNISFGANNIESQLGMPVINDPLITKGGMVESGKDFSNNGMLSSYENPKEAQPELSSSMVSQSFGVPDITFNSIDSAINDNSFLNRGAWVPPPQFQRLRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNNVLPNQACSSSDGGM

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.399
	SRR3591706	second leaf	28.074
	SRR3591707	mature leaf	17.156
	SRR3591708	Shoot apex	47.967
	SRR3591709	Stem	78.848
	SRR3591710	White floral bud	74.251
	SRR3591711	White flower	78.747
	SRR3591712	Green floral bud	22.314
	SRR3591713	Yellow flower	32.701
SRP173429	SRR8316895	Juvenile bud stage	12.429
	SRR8316896	Juvenile bud stage	15.411
	SRR8316897	Juvenile bud stage	6.073
	SRR8316894	Third green stage	6.706
	SRR8316900	Third green stage	9.904
	SRR8316901	Third green stage	10.713
	SRR8316898	Complete white stage	9.722
	SRR8316899	Complete white stage	20.770
	SRR8316903	Complete white stage	40.134
	SRR8316902	Silver flowering stage	26.968
	SRR8316904	Silver flowering stage	42.192
	SRR8316905	Silver flowering stage	18.778
	SRR8316906	Gold flowering stage	52.163
	SRR8316907	Gold flowering stage	48.566
	SRR8316908	Gold flowering stage	48.275
SRP132670	SRR6706286	Control	22.961
	SRR6706287	Light intensity 50%	20.557
	SRR6706288	Light intensity 20%	16.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.808
	CNS0095593	Slightly white alabastrum(diploid) 2	10.558
	CNS0095594	Slightly white alabastrum(diploid) 3	10.543
	CNS0095595	Whole white alabastrum(diploid) 2	9.683
	CNS0095596	Whole white alabastrum(diploid) 3	3.095
	CNS0095597	Whole white alabastrum(diploid) 4	9.506
	CNS0095598	Silvery flower (diploied) 1	45.985
	CNS0095599	Silvery flower (diploied) 2	32.068
	CNS0095600	Silvery flower (diploied) 3	68.490
	CNS0095601	Golden flower (diploid) 1	38.866
	CNS0095602	Golden flower (diploid) 2	54.352
	CNS0095603	Golden flower (diploid) 3	52.783
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.331
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.744
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.090
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.114
	CNS0095610	Silvery flower (tetraploid) 1	34.179
	CNS0095611	Silvery flower (tetraploid) 2	40.427
	CNS0095612	Silvery flower (tetraploid) 3	72.123
	CNS0095613	Golden flower (tetraploid) 1	18.463
	CNS0095614	Golden flower (tetraploid) 2	17.633
	CNS0095615	Golden flower (tetraploid) 3	20.189
CRA001975	CRR073297	Stem 1	50.950
	CRR073298	Stem 2	46.147
	CRR073299	Stem 3	41.856
	CRR073300	Leaf 1	33.765
	CRR073301	Leaf 2	28.845
	CRR073302	Leaf 3	18.645
	CRR073303	Juvenile bud 1	20.293
	CRR073304	Juvenile bud 2	14.882
	CRR073305	Juvenile bud 3	55.294
	CRR073306	Third green 1	157.440
	CRR073307	Third green 2	81.886
	CRR073308	Third green 3	128.872
	CRR073309	Second white 1	135.310
	CRR073310	Second white 2	188.342
	CRR073311	Second white 3	182.806
	CRR073312	Silver flowering 1	94.087
	CRR073313	Silver flowering 2	103.249
	CRR073314	Silver flowering 3	88.397
	CRR073315	Gold flowering 1	10.115
	CRR073316	Gold flowering 2	11.529
	CRR073317	Gold flowering 3	13.032
	CRR073318	Tawny withering 1	39.975
	CRR073319	Tawny withering 2	36.611
	CRR073320	Tawny withering 3	37.134