Gene detail

Detail information of GWHGAAZE020043

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004237711.1	4.89374E-51	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	4E-18	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|K4BT34\|K4BT34_SOLLC	1E-48	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g063440.1.1}
TAIR10	AT3G06240.1	2E-16	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	74602183	74605349	-
GWHAAZE00000005	mRNA	74602183	74605349	-
GWHAAZE00000005	exon	74602183	74602517	-
GWHAAZE00000005	exon	74602583	74602668	-
GWHAAZE00000005	exon	74604196	74605349	-
GWHAAZE00000005	CDS	74604196	74605349	-
GWHAAZE00000005	CDS	74602583	74602668	-
GWHAAZE00000005	CDS	74602183	74602517	-

Transcript Sequence
>GWHTAAZE020065 ATGGGGAGCAGTGGCAATTGTGATCTGCCGGAAGATTTGTTGATTGACATTCTCTCAAGCCTGCCTGTGAAATCCCTACTGCGTTGCAAGTGTGTGTGTAAGGACTGGTACACTCTCATTCAAAGCCCTACTTTGATTAGCAATCACTTCCACCATCACAACAATCTTAACCGTCTTCTTGTTCATCGTTGTTGCGTTTACCGTCGTCCGGACCTTCATACAGATGAACTTGTTGCCCCTCCTAAATCTGTTCTTGCCTTGTTCCCTAATGAACTTCTTTCCGAGTTCGCCTCCCTTGTACATCAAGTTGTTGATTCTCCCGTGGGTTATCGATATTTTGATGTAATTGGTCCTGTGCACGGCCTTTTTATGGTGTTATGTTGTCGTCGTTTTGCTCGCTTTTGGAATTGTTTGGCTCTTTGGAACCCCGCCACAAAGGAGTTCAGGGTCCTCCCTTTACCTAGCTTCGACCATCAGCCACCGGATTGCATGTGGAGTGGAACTAATTTCGGGTTTGGGTGGGACCCCTCTACAAGTAATTTTAAGGTGGTTTGGCTTCAATTTTCGATACGTACCAATGCAGTTGTTGCAGCAGTGTATACCTTAGCAACTGACTCTTGGAGACAACTTGATCTCACTAGTACTGATACGTATGGTGTGGTTTCTTCAGTCATGGGTATATTATCCAAACGATTTTTTCATGATTTCACGGGACGGCGTATTTGTACGTATCTGAATGGAGCGTATTACTGGTTGTCACGTGACCCAGTTGACAATAGCATTAAAATAGTTTTGTTTGACTTGGAGGGGGAGGCGTTTCTTGAGATACCACCACCCCCGTTGAATCCTGAGAAATGTTCTTCTAGTTCGAAGAATCTAGAGCTCTTGTTGCGTAATGACTCTATTGCTTTGTTAATATCCAAATCTTCTGGCACCATTCTGGTATCTATTGACGTATGGTTAATGGGGCAAGAGGGGTGTTGGACCGACCATCTCGTTTTCCGGCCCCTTCTTGAGGTATACAGACCGCTTGCGTTTTGGGAAAATGGGGAGGCGCTTTTCTTCGAAACTCGTGATATGCAGCTGCTATTATACAACCCTAAGAATAGCAAAACCAACAACGATGTAGTAGTTGGTAATTTTGGAATGAAGGGTGAGTATCATGCTTCTCAGTTAAACACGGATCACACCTTGGACTGGGGCAATATGGCTGGAGAAGAGCCATTTCGGTCTTTTGGAGCTCAACAAAATAATAACCCATCCATTTTAAATCAGAATTTCCCTCCTTTGGGTGAATGCAGCACTATTGCCCTTCAATCTCATACTTCCACAACAGGTGGATCTGAGTATGCTCCATCTCCTATCAAAACAAGAGCTCAAAGGCAGAAAAAGGGTCAACCTTTATCTCTTACCAAGCAATTGAAGGCAACGAAAGCTGCCAACAGAGAATTGAAAGCTCCTTCAAGGGTTTCTAAAACTACATCTCAATCTAAACCTTTAGATCCAGATGAGTATCAATGGCAATGGTATTTGAAGAACAATGCTCTTAGATCAAGGGACAAAAGGTACAGTTAA

Network for GWHGAAZE020043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	7	44	2.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.182
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.009
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.197
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.047
	SRR3591712	Green floral bud	0.069
	SRR3591713	Yellow flower	0.046
SRP173429	SRR8316895	Juvenile bud stage	0.189
	SRR8316896	Juvenile bud stage	0.129
	SRR8316897	Juvenile bud stage	0.251
	SRR8316894	Third green stage	0.026
	SRR8316900	Third green stage	0.343
	SRR8316901	Third green stage	0.362
	SRR8316898	Complete white stage	0.341
	SRR8316899	Complete white stage	0.581
	SRR8316903	Complete white stage	0.219
	SRR8316902	Silver flowering stage	0.106
	SRR8316904	Silver flowering stage	0.088
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.015
	SRR8316907	Gold flowering stage	0.112
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	0.344
	SRR6706287	Light intensity 50%	0.427
	SRR6706288	Light intensity 20%	0.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.327
	CNS0095593	Slightly white alabastrum(diploid) 2	0.391
	CNS0095594	Slightly white alabastrum(diploid) 3	0.069
	CNS0095595	Whole white alabastrum(diploid) 2	0.438
	CNS0095596	Whole white alabastrum(diploid) 3	0.175
	CNS0095597	Whole white alabastrum(diploid) 4	0.382
	CNS0095598	Silvery flower (diploied) 1	0.196
	CNS0095599	Silvery flower (diploied) 2	0.155
	CNS0095600	Silvery flower (diploied) 3	0.325
	CNS0095601	Golden flower (diploid) 1	0.078
	CNS0095602	Golden flower (diploid) 2	0.177
	CNS0095603	Golden flower (diploid) 3	0.160
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.244
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.210
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.076
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.139
	CNS0095610	Silvery flower (tetraploid) 1	0.199
	CNS0095611	Silvery flower (tetraploid) 2	0.234
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.123
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	0.397
	CRR073298	Stem 2	0.445
	CRR073299	Stem 3	0.060
	CRR073300	Leaf 1	0.570
	CRR073301	Leaf 2	0.522
	CRR073302	Leaf 3	0.068
	CRR073303	Juvenile bud 1	0.203
	CRR073304	Juvenile bud 2	0.105
	CRR073305	Juvenile bud 3	0.316
	CRR073306	Third green 1	0.127
	CRR073307	Third green 2	0.045
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.168
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.029
	CRR073316	Gold flowering 2	0.050
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.022
	CRR073319	Tawny withering 2	0.061
	CRR073320	Tawny withering 3	0.053