Detail information of GWHGAAZE020044


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006356327.11.1455E-35PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X3 [Solanum tuberosum]
Swissprottr|Q9LPH0|FB57_ARATH1E-13Putative F-box protein At1g53550
trEMBLtr|M1CBE9|M1CBE9_SOLTU1E-35Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400063879}
TAIR10AT1G53550.18E-12F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7460886174612267-
GWHAAZE00000005mRNA7460886174612267-
GWHAAZE00000005exon7461147074612267-
GWHAAZE00000005exon7460886174609046-
GWHAAZE00000005CDS7461147074612267-
GWHAAZE00000005CDS7460886174609046-
Transcript Sequence

Network for GWHGAAZE020044

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like7451.20E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.275
SRR3591706second leaf0.414
SRR3591707mature leaf0.616
SRR3591708Shoot apex1.330
SRR3591709Stem1.042
SRR3591710White floral bud1.050
SRR3591711White flower1.267
SRR3591712Green floral bud1.903
SRR3591713Yellow flower0.444
SRP173429 SRR8316895Juvenile bud stage 0.547
SRR8316896Juvenile bud stage 1.220
SRR8316897Juvenile bud stage 0.185
SRR8316894Third green stage 0.726
SRR8316900Third green stage 1.263
SRR8316901Third green stage 1.445
SRR8316898Complete white stage 0.621
SRR8316899Complete white stage 3.392
SRR8316903Complete white stage 0.750
SRR8316902Silver flowering stage0.188
SRR8316904Silver flowering stage0.338
SRR8316905Silver flowering stage0.233
SRR8316906Gold flowering stage 0.308
SRR8316907Gold flowering stage 0.694
SRR8316908Gold flowering stage 0.450
SRP132670SRR6706286Control1.920
SRR6706287Light intensity 50%1.819
SRR6706288Light intensity 20%2.049
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.888
CNS0095593Slightly white alabastrum(diploid) 20.523
CNS0095594Slightly white alabastrum(diploid) 30.462
CNS0095595Whole white alabastrum(diploid) 20.720
CNS0095596Whole white alabastrum(diploid) 30.558
CNS0095597Whole white alabastrum(diploid) 40.394
CNS0095598Silvery flower (diploied) 11.117
CNS0095599Silvery flower (diploied) 20.514
CNS0095600Silvery flower (diploied) 31.266
CNS0095601Golden flower (diploid) 10.638
CNS0095602Golden flower (diploid) 21.564
CNS0095603Golden flower (diploid) 31.438
CNS0095604Slightly white alabastrum(tetraploid) 10.364
CNS0095605Slightly white alabastrum(tetraploid) 20.302
CNS0095606Slightly white alabastrum(tetraploid) 30.416
CNS0095607Whole white alabastrum(tetraploid) 10.273
CNS0095608Whole white alabastrum(tetraploid) 20.124
CNS0095609Whole white alabastrum(tetraploid) 30.372
CNS0095610Silvery flower (tetraploid) 10.213
CNS0095611Silvery flower (tetraploid) 20.371
CNS0095612Silvery flower (tetraploid) 30.698
CNS0095613Golden flower (tetraploid) 10.056
CNS0095614Golden flower (tetraploid) 20.227
CNS0095615Golden flower (tetraploid) 30.069
CRA001975CRR073297Stem 12.688
CRR073298Stem 21.662
CRR073299Stem 31.554
CRR073300Leaf 12.161
CRR073301Leaf 21.367
CRR073302Leaf 31.014
CRR073303Juvenile bud 11.440
CRR073304Juvenile bud 21.539
CRR073305Juvenile bud 31.440
CRR073306Third green 10.606
CRR073307Third green 20.757
CRR073308Third green 30.848
CRR073309Second white 10.111
CRR073310Second white 20.869
CRR073311Second white 30.987
CRR073312Silver flowering 10.289
CRR073313Silver flowering 20.022
CRR073314Silver flowering 30.017
CRR073315Gold flowering 10.146
CRR073316Gold flowering 20.327
CRR073317Gold flowering 30.144
CRR073318Tawny withering 11.499
CRR073319Tawny withering 20.661
CRR073320Tawny withering 30.385