Detail information of GWHGAAZE020047


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009788902.11.38503E-48PREDICTED: F-box only protein 8-like [Nicotiana sylvestris]
Swissprottr|Q8GXC7|FBK50_ARATH2E-13F-box/kelch-repeat protein At3g06240
trEMBLtr|K4BT34|K4BT34_SOLLC4E-44Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g063440.1.1}
TAIR10AT3G06240.11E-11F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7463036074631641-
GWHAAZE00000005mRNA7463036074631641-
GWHAAZE00000005exon7463036074631208-
GWHAAZE00000005exon7463130374631641-
GWHAAZE00000005CDS7463130374631641-
GWHAAZE00000005CDS7463036074631208-
Transcript Sequence

Network for GWHGAAZE020047

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like7451.60E-10
PF07734.14FBA_12073401.20E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.637
SRR3591706second leaf0.198
SRR3591707mature leaf0.357
SRR3591708Shoot apex1.495
SRR3591709Stem1.287
SRR3591710White floral bud1.127
SRR3591711White flower1.148
SRR3591712Green floral bud1.827
SRR3591713Yellow flower0.284
SRP173429 SRR8316895Juvenile bud stage 0.769
SRR8316896Juvenile bud stage 1.935
SRR8316897Juvenile bud stage 0.255
SRR8316894Third green stage 0.600
SRR8316900Third green stage 1.790
SRR8316901Third green stage 1.695
SRR8316898Complete white stage 0.729
SRR8316899Complete white stage 2.579
SRR8316903Complete white stage 0.823
SRR8316902Silver flowering stage0.221
SRR8316904Silver flowering stage0.556
SRR8316905Silver flowering stage0.318
SRR8316906Gold flowering stage 0.346
SRR8316907Gold flowering stage 0.303
SRR8316908Gold flowering stage 0.556
SRP132670SRR6706286Control1.645
SRR6706287Light intensity 50%1.490
SRR6706288Light intensity 20%1.539
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.547
CNS0095593Slightly white alabastrum(diploid) 20.839
CNS0095594Slightly white alabastrum(diploid) 32.069
CNS0095595Whole white alabastrum(diploid) 21.327
CNS0095596Whole white alabastrum(diploid) 31.238
CNS0095597Whole white alabastrum(diploid) 41.162
CNS0095598Silvery flower (diploied) 11.520
CNS0095599Silvery flower (diploied) 20.871
CNS0095600Silvery flower (diploied) 31.467
CNS0095601Golden flower (diploid) 11.372
CNS0095602Golden flower (diploid) 21.758
CNS0095603Golden flower (diploid) 31.529
CNS0095604Slightly white alabastrum(tetraploid) 10.331
CNS0095605Slightly white alabastrum(tetraploid) 20.443
CNS0095606Slightly white alabastrum(tetraploid) 30.634
CNS0095607Whole white alabastrum(tetraploid) 10.928
CNS0095608Whole white alabastrum(tetraploid) 20.303
CNS0095609Whole white alabastrum(tetraploid) 30.464
CNS0095610Silvery flower (tetraploid) 10.493
CNS0095611Silvery flower (tetraploid) 20.206
CNS0095612Silvery flower (tetraploid) 30.358
CNS0095613Golden flower (tetraploid) 10.046
CNS0095614Golden flower (tetraploid) 20.236
CNS0095615Golden flower (tetraploid) 30.024
CRA001975CRR073297Stem 12.222
CRR073298Stem 21.490
CRR073299Stem 31.054
CRR073300Leaf 11.754
CRR073301Leaf 20.972
CRR073302Leaf 30.693
CRR073303Juvenile bud 12.144
CRR073304Juvenile bud 21.311
CRR073305Juvenile bud 31.719
CRR073306Third green 10.625
CRR073307Third green 20.985
CRR073308Third green 30.376
CRR073309Second white 10.208
CRR073310Second white 20.635
CRR073311Second white 30.800
CRR073312Silver flowering 10.164
CRR073313Silver flowering 20.055
CRR073314Silver flowering 31.031
CRR073315Gold flowering 10.178
CRR073316Gold flowering 20.853
CRR073317Gold flowering 30.083
CRR073318Tawny withering 11.468
CRR073319Tawny withering 21.262
CRR073320Tawny withering 30.215