Detail information of GWHGAAZE020049


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004237711.11.67727E-41PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprottr|Q8GXC7|FBK50_ARATH1E-19F-box/kelch-repeat protein At3g06240
trEMBLtr|K4BT34|K4BT34_SOLLC9E-38Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g063440.1.1}
TAIR10AT3G06240.12E-18F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7474180274743136+
GWHAAZE00000005mRNA7474180274743136+
GWHAAZE00000005exon7474180274743136+
GWHAAZE00000005CDS7474180274743136+
Transcript Sequence

Network for GWHGAAZE020049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like15501.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.777
SRR3591706second leaf1.133
SRR3591707mature leaf1.027
SRR3591708Shoot apex2.141
SRR3591709Stem1.559
SRR3591710White floral bud1.432
SRR3591711White flower1.374
SRR3591712Green floral bud1.266
SRR3591713Yellow flower0.651
SRP173429 SRR8316895Juvenile bud stage 1.546
SRR8316896Juvenile bud stage 2.360
SRR8316897Juvenile bud stage 1.032
SRR8316894Third green stage 0.860
SRR8316900Third green stage 1.464
SRR8316901Third green stage 1.539
SRR8316898Complete white stage 0.306
SRR8316899Complete white stage 2.070
SRR8316903Complete white stage 1.228
SRR8316902Silver flowering stage0.281
SRR8316904Silver flowering stage0.678
SRR8316905Silver flowering stage0.925
SRR8316906Gold flowering stage 0.622
SRR8316907Gold flowering stage 0.854
SRR8316908Gold flowering stage 1.039
SRP132670SRR6706286Control3.183
SRR6706287Light intensity 50%3.290
SRR6706288Light intensity 20%3.866
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.831
CNS0095593Slightly white alabastrum(diploid) 20.773
CNS0095594Slightly white alabastrum(diploid) 30.796
CNS0095595Whole white alabastrum(diploid) 21.150
CNS0095596Whole white alabastrum(diploid) 31.093
CNS0095597Whole white alabastrum(diploid) 41.157
CNS0095598Silvery flower (diploied) 10.482
CNS0095599Silvery flower (diploied) 20.581
CNS0095600Silvery flower (diploied) 32.760
CNS0095601Golden flower (diploid) 10.641
CNS0095602Golden flower (diploid) 22.209
CNS0095603Golden flower (diploid) 32.808
CNS0095604Slightly white alabastrum(tetraploid) 12.379
CNS0095605Slightly white alabastrum(tetraploid) 22.034
CNS0095606Slightly white alabastrum(tetraploid) 33.347
CNS0095607Whole white alabastrum(tetraploid) 12.598
CNS0095608Whole white alabastrum(tetraploid) 22.237
CNS0095609Whole white alabastrum(tetraploid) 33.009
CNS0095610Silvery flower (tetraploid) 13.134
CNS0095611Silvery flower (tetraploid) 24.491
CNS0095612Silvery flower (tetraploid) 32.506
CNS0095613Golden flower (tetraploid) 10.480
CNS0095614Golden flower (tetraploid) 21.899
CNS0095615Golden flower (tetraploid) 33.185
CRA001975CRR073297Stem 12.488
CRR073298Stem 22.327
CRR073299Stem 31.863
CRR073300Leaf 12.709
CRR073301Leaf 21.858
CRR073302Leaf 31.794
CRR073303Juvenile bud 11.615
CRR073304Juvenile bud 20.975
CRR073305Juvenile bud 30.886
CRR073306Third green 10.376
CRR073307Third green 20.203
CRR073308Third green 30.912
CRR073309Second white 10.912
CRR073310Second white 20.454
CRR073311Second white 30.058
CRR073312Silver flowering 10.226
CRR073313Silver flowering 20.115
CRR073314Silver flowering 30.038
CRR073315Gold flowering 10.211
CRR073316Gold flowering 20.393
CRR073317Gold flowering 30.579
CRR073318Tawny withering 11.058
CRR073319Tawny withering 21.142
CRR073320Tawny withering 30.533