Detail information of GWHGAAZE020050


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004237711.19.12292E-42PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum lycopersicum]
Swissprottr|Q8GXC7|FBK50_ARATH5E-19F-box/kelch-repeat protein At3g06240
trEMBLtr|U7DXF5|U7DXF5_POPTR2E-38Uncharacterized protein {ECO:0000313|EMBL:ERP46879.1}
TAIR10AT3G06240.16E-18F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7474348274744813+
GWHAAZE00000005mRNA7474348274744813+
GWHAAZE00000005exon7474348274744813+
GWHAAZE00000005CDS7474348274744813+
Transcript Sequence

Network for GWHGAAZE020050

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box19564.10E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.997
SRR3591706second leaf1.374
SRR3591707mature leaf1.092
SRR3591708Shoot apex2.713
SRR3591709Stem2.140
SRR3591710White floral bud1.250
SRR3591711White flower2.044
SRR3591712Green floral bud1.997
SRR3591713Yellow flower0.934
SRP173429 SRR8316895Juvenile bud stage 1.906
SRR8316896Juvenile bud stage 3.541
SRR8316897Juvenile bud stage 2.268
SRR8316894Third green stage 1.524
SRR8316900Third green stage 2.329
SRR8316901Third green stage 2.835
SRR8316898Complete white stage 0.535
SRR8316899Complete white stage 2.539
SRR8316903Complete white stage 1.225
SRR8316902Silver flowering stage0.737
SRR8316904Silver flowering stage1.226
SRR8316905Silver flowering stage0.288
SRR8316906Gold flowering stage 1.319
SRR8316907Gold flowering stage 1.299
SRR8316908Gold flowering stage 0.748
SRP132670SRR6706286Control2.351
SRR6706287Light intensity 50%2.752
SRR6706288Light intensity 20%2.581
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.518
CNS0095593Slightly white alabastrum(diploid) 23.869
CNS0095594Slightly white alabastrum(diploid) 33.906
CNS0095595Whole white alabastrum(diploid) 23.533
CNS0095596Whole white alabastrum(diploid) 34.658
CNS0095597Whole white alabastrum(diploid) 44.840
CNS0095598Silvery flower (diploied) 12.645
CNS0095599Silvery flower (diploied) 21.928
CNS0095600Silvery flower (diploied) 32.981
CNS0095601Golden flower (diploid) 13.318
CNS0095602Golden flower (diploid) 23.114
CNS0095603Golden flower (diploid) 32.729
CNS0095604Slightly white alabastrum(tetraploid) 13.272
CNS0095605Slightly white alabastrum(tetraploid) 24.888
CNS0095606Slightly white alabastrum(tetraploid) 35.001
CNS0095607Whole white alabastrum(tetraploid) 15.169
CNS0095608Whole white alabastrum(tetraploid) 24.857
CNS0095609Whole white alabastrum(tetraploid) 34.002
CNS0095610Silvery flower (tetraploid) 14.041
CNS0095611Silvery flower (tetraploid) 25.160
CNS0095612Silvery flower (tetraploid) 33.980
CNS0095613Golden flower (tetraploid) 11.259
CNS0095614Golden flower (tetraploid) 22.601
CNS0095615Golden flower (tetraploid) 33.072
CRA001975CRR073297Stem 13.911
CRR073298Stem 23.336
CRR073299Stem 32.050
CRR073300Leaf 13.887
CRR073301Leaf 23.759
CRR073302Leaf 31.436
CRR073303Juvenile bud 11.196
CRR073304Juvenile bud 21.220
CRR073305Juvenile bud 31.775
CRR073306Third green 10.165
CRR073307Third green 20.619
CRR073308Third green 30.935
CRR073309Second white 10.763
CRR073310Second white 20.891
CRR073311Second white 30.733
CRR073312Silver flowering 10.373
CRR073313Silver flowering 20.058
CRR073314Silver flowering 30.311
CRR073315Gold flowering 10.597
CRR073316Gold flowering 20.446
CRR073317Gold flowering 30.292
CRR073318Tawny withering 13.131
CRR073319Tawny withering 22.031
CRR073320Tawny withering 32.397