Gene detail

Detail information of GWHGAAZE020055

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGE10593.1	0	cinnamate 4-hydroxylase [Lonicera japonica]
COG	YP_004862454.1	1E-28	Cytochrome P450
Swissprot	tr\|H2DH22\|C7A10_PANGI	0	Cytochrome P450 CYP73A100
trEMBL	tr\|L7Z967\|L7Z967_LONJA	0	Cinnamate 4-hydroxylase {ECO:0000313\|EMBL:AGE10593.1}
TAIR10	AT2G30490.1	2E-108	cinnamate-4-hydroxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	74906663	74908523	-
GWHAAZE00000005	mRNA	74906663	74908523	-
GWHAAZE00000005	exon	74906663	74907398	-
GWHAAZE00000005	exon	74908279	74908523	-
GWHAAZE00000005	CDS	74908279	74908523	-
GWHAAZE00000005	CDS	74906663	74907398	-

Transcript Sequence
>GWHTAAZE020077 ATGCTCTATAATATTATGTATCGTATGATGTTCGATGCCAAGTTCGAGTCACAAGATGACCCGTTGTTCATCGAGGCGACCAAGTTTAACTCAGAGAGGAGCCAGTTGGCTCAAAGCTTCGAGTACAATTATGGCGATTTCATCCCTTTGCTTAGACCATTCTTAAGGGGGTATTTGAACAAATGCAAAGACTTACAAAGCAGGAGGCTCGCATTTTTCGACAAATATTATGTTCAGAAAAGGCGGGACATAATGGCTAAGAATGGAGATAAGCGTAAGATAAGTTGTGGCATTGATCACATAATAGATGCACAAATGAACGGAGAAATAACTGAAGAAAATGTGCTGTACATTGTGGAAAACATTAACGTAGCAGCAATAGAGACAACCCTATGGTCAATGGAGTGGGCCATAGCTGACCTAGTCAACCATCCGGCCGTCCAATGCAAGATCCGAGAAGAGATCTCAACCGTCCTTAAAGGAAACCCAGTCACGGAATCCAACCTTTACAAATTGCCATATTTACAAGCCACTATCAAAGAGACCCTCAGGCTACACACGCCGGTACCTTTACTACTCCCACATATGAACCTCGAAGAGGCTACACTAGGCGGCTACACCATCCCTAAAGAGTCAAAGGTGGTGGTAAATGCTTGGTGGCTAGCCAACAACCCAGCATGGTGGAAAAACCCTAGCGAGTTCCGACCGGAGCGGTTCATGGAGGAGGAAGGCGGCACGGAGGCGGTTACCGGAGGTAAGGTGGATTTCCGGTACTTGCCGTTTGGAATGGGGCGGCGGAGCTGCCCGGGGTTCATGCTTGCACTTCCAATTCTAGGGCTTGCAATTGCAAAACTTATCATGAATTTCGAGATTAGGGTTCCTCCAGGGATGGGAGAGATTGATGTGAGTGAAAAAGGAGGGCAATTTAGCTTGCATATTTCAACACATTCCACAGTTGTCTTCAATCCTATTGTGGCATAA

Network for GWHGAAZE020055

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	2	315	6.60E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00487	CYP73A	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Degradation of aromatic compounds	map01220
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.013
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.047
	SRR3591709	Stem	0.138
	SRR3591710	White floral bud	0.192
	SRR3591711	White flower	0.459
	SRR3591712	Green floral bud	0.092
	SRR3591713	Yellow flower	2.712
SRP173429	SRR8316895	Juvenile bud stage	0.133
	SRR8316896	Juvenile bud stage	0.261
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.279
	SRR8316901	Third green stage	0.201
	SRR8316898	Complete white stage	0.190
	SRR8316899	Complete white stage	0.458
	SRR8316903	Complete white stage	0.130
	SRR8316902	Silver flowering stage	0.090
	SRR8316904	Silver flowering stage	0.365
	SRR8316905	Silver flowering stage	0.205
	SRR8316906	Gold flowering stage	0.932
	SRR8316907	Gold flowering stage	0.838
	SRR8316908	Gold flowering stage	0.921
SRP132670	SRR6706286	Control	1.099
	SRR6706287	Light intensity 50%	0.413
	SRR6706288	Light intensity 20%	0.176
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.443
	CNS0095593	Slightly white alabastrum(diploid) 2	0.177
	CNS0095594	Slightly white alabastrum(diploid) 3	0.336
	CNS0095595	Whole white alabastrum(diploid) 2	0.090
	CNS0095596	Whole white alabastrum(diploid) 3	0.034
	CNS0095597	Whole white alabastrum(diploid) 4	0.260
	CNS0095598	Silvery flower (diploied) 1	0.764
	CNS0095599	Silvery flower (diploied) 2	0.580
	CNS0095600	Silvery flower (diploied) 3	0.527
	CNS0095601	Golden flower (diploid) 1	0.750
	CNS0095602	Golden flower (diploid) 2	1.194
	CNS0095603	Golden flower (diploid) 3	1.473
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.188
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.105
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.117
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.052
	CNS0095610	Silvery flower (tetraploid) 1	0.304
	CNS0095611	Silvery flower (tetraploid) 2	0.099
	CNS0095612	Silvery flower (tetraploid) 3	0.483
	CNS0095613	Golden flower (tetraploid) 1	0.233
	CNS0095614	Golden flower (tetraploid) 2	0.873
	CNS0095615	Golden flower (tetraploid) 3	0.186
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.090
	CRR073300	Leaf 1	0.106
	CRR073301	Leaf 2	0.303
	CRR073302	Leaf 3	0.040
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.258
	CRR073305	Juvenile bud 3	0.081
	CRR073306	Third green 1	0.011
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.040
	CRR073310	Second white 2	0.138
	CRR073311	Second white 3	0.109
	CRR073312	Silver flowering 1	0.515
	CRR073313	Silver flowering 2	0.853
	CRR073314	Silver flowering 3	0.760
	CRR073315	Gold flowering 1	0.076
	CRR073316	Gold flowering 2	0.053
	CRR073317	Gold flowering 3	0.378
	CRR073318	Tawny withering 1	33.287
	CRR073319	Tawny withering 2	31.473
	CRR073320	Tawny withering 3	8.552