Gene detail

Detail information of GWHGAAZE020056

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGE10593.1	0	cinnamate 4-hydroxylase [Lonicera japonica]
COG	YP_004862454.1	9E-30	Cytochrome P450
Swissprot	tr\|H2DH22\|C7A10_PANGI	0	Cytochrome P450 CYP73A100
trEMBL	tr\|L7Z967\|L7Z967_LONJA	0	Cinnamate 4-hydroxylase {ECO:0000313\|EMBL:AGE10593.1}
TAIR10	AT2G30490.1	2E-155	cinnamate-4-hydroxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	74911234	74913089	-
GWHAAZE00000005	mRNA	74911234	74913089	-
GWHAAZE00000005	exon	74911234	74911969	-
GWHAAZE00000005	exon	74912485	74913089	-
GWHAAZE00000005	CDS	74912485	74913089	-
GWHAAZE00000005	CDS	74911234	74911969	-

Transcript Sequence
>GWHTAAZE020078 ATGTCCCAAACCTATGGCCCCGTATTTCTACTCAAACTCGGCTCGAAAAACTTAACTGTTGTATCAGAGCCAGAGTTAGCCAACCAAGTCCTCCACGCCCAAGGGGTTGAGTTTGGGTCACGTCCTAGAAATGTCGTGTTCGATATATTCACGGGTAATGGTCAAGACATGGTCTTCACGATCTACGGTGATCATTGGCGTAAGATGCGACGTATAATGACTCTCCCGTTTTTCACTAACAAAGTTGTTCACCAATATAGTGACATGTGGGAGGAAGAAATGGACCTAGTAGTTGATGATTTGAGGTCGAGTGAGAGTGTGAAGAAAGAAGGGATGGTAATTCGAAAGCGCTTACAGTTGATGCTCTATAACATTATGTATCGTATGATGTTTGATGCAAAGTTTAAGTCGCAAGATGACCCATTGTTCATCGAGGCAACGAAGTTTAACTCAGAGAGAAGCCGGTTAGCTCAAAGCTTTGAATACAATTATGGAGATTTTATCCCTTTGCTTAGACCATTCTTAAGGGGGTATTTGAACAAGTGCAAAGACTTACAACGGCGAAGGCTCGCATTTTTCGACAAATATTATGTTCAACAAAGACGGGACATAATGGCTAAAAATGGAGAGAAGCACAAGATAAGTTGTGCCATTGATCACATAATAGATGCACAAATGAAAGGAGAAATAAGTGAAGAAAATGTGCTCTACATTGTGGAGAACATCAATGTGGCAGCCATAGAGACAACCCTATGGTCAATGGAGTGGGCCATAGCTGAGCTGGTCAACCATCCAACTGTCCAATGCAAAATCCGAGACGAGATCTCGACCGTCCTTAAAGGAAACTCAGTCACAGAATCCAACCTTCACGAATTGCCGTATTTACAAGCCACGGTCAAAGAGACCCTGAGGCTACACACCCCGATACCTTTACTAGTCCCACATATGAACCTCGAACAAGCTACCCTAGGCGGCTACACCATCCCAAAAGAGTCAAAGGTGGTGGTCAACGCTTGGTGGCTAGCCAACAACCCGGCATGGTGGAGAAATCCTAGCGAGTTCCGACCGGAGCGGTTCATGGAGGAGGAAGGCAGCACAGACGCGGTTGCGGGAGGTAAGGTGGATTTTCGGTACTTGCCATTCGGAGTTGGGCGGCGGAGCTGCCCCGGGATTATACTTGCCCTTCCAATTCTAGGGCTTGTGATTGCAAAACTTGTCATGAATTTCGAGATTAGGGCACCGATAGGGACCGAAAAGATTGATGTGAGTGAGAAAGGAGGGCAATTTAGTTTGCACATTGCAAAACATTCCACAGTTGTCTTCAATCCTATTGTGGCATAA

Network for GWHGAAZE020056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	2	435	1.40E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00487	CYP73A	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Degradation of aromatic compounds	map01220
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.526
	SRR3591706	second leaf	1.057
	SRR3591707	mature leaf	0.124
	SRR3591708	Shoot apex	3.530
	SRR3591709	Stem	137.509
	SRR3591710	White floral bud	1.935
	SRR3591711	White flower	2.947
	SRR3591712	Green floral bud	2.492
	SRR3591713	Yellow flower	8.603
SRP173429	SRR8316895	Juvenile bud stage	2.548
	SRR8316896	Juvenile bud stage	1.531
	SRR8316897	Juvenile bud stage	2.253
	SRR8316894	Third green stage	1.036
	SRR8316900	Third green stage	1.728
	SRR8316901	Third green stage	2.184
	SRR8316898	Complete white stage	0.126
	SRR8316899	Complete white stage	0.636
	SRR8316903	Complete white stage	0.397
	SRR8316902	Silver flowering stage	0.276
	SRR8316904	Silver flowering stage	0.337
	SRR8316905	Silver flowering stage	0.277
	SRR8316906	Gold flowering stage	1.206
	SRR8316907	Gold flowering stage	1.755
	SRR8316908	Gold flowering stage	10.909
SRP132670	SRR6706286	Control	0.760
	SRR6706287	Light intensity 50%	0.920
	SRR6706288	Light intensity 20%	0.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.072
	CNS0095593	Slightly white alabastrum(diploid) 2	0.649
	CNS0095594	Slightly white alabastrum(diploid) 3	1.821
	CNS0095595	Whole white alabastrum(diploid) 2	0.135
	CNS0095596	Whole white alabastrum(diploid) 3	0.672
	CNS0095597	Whole white alabastrum(diploid) 4	1.309
	CNS0095598	Silvery flower (diploied) 1	1.789
	CNS0095599	Silvery flower (diploied) 2	0.474
	CNS0095600	Silvery flower (diploied) 3	0.599
	CNS0095601	Golden flower (diploid) 1	0.876
	CNS0095602	Golden flower (diploid) 2	3.107
	CNS0095603	Golden flower (diploid) 3	2.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.828
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.357
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.428
	CNS0095610	Silvery flower (tetraploid) 1	0.309
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.683
	CNS0095613	Golden flower (tetraploid) 1	4.209
	CNS0095614	Golden flower (tetraploid) 2	2.934
	CNS0095615	Golden flower (tetraploid) 3	0.692
CRA001975	CRR073297	Stem 1	5.377
	CRR073298	Stem 2	4.102
	CRR073299	Stem 3	8.076
	CRR073300	Leaf 1	2.491
	CRR073301	Leaf 2	1.881
	CRR073302	Leaf 3	4.790
	CRR073303	Juvenile bud 1	0.841
	CRR073304	Juvenile bud 2	0.446
	CRR073305	Juvenile bud 3	1.952
	CRR073306	Third green 1	0.981
	CRR073307	Third green 2	1.259
	CRR073308	Third green 3	2.270
	CRR073309	Second white 1	0.459
	CRR073310	Second white 2	1.339
	CRR073311	Second white 3	0.723
	CRR073312	Silver flowering 1	3.807
	CRR073313	Silver flowering 2	5.648
	CRR073314	Silver flowering 3	4.721
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.974
	CRR073318	Tawny withering 1	49.970
	CRR073319	Tawny withering 2	75.106
	CRR073320	Tawny withering 3	35.141