Gene detail

Detail information of GWHGAAZE020097

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGE10593.1	0	cinnamate 4-hydroxylase [Lonicera japonica]
COG	YP_004862454.1	1E-30	Cytochrome P450
Swissprot	tr\|H2DH22\|C7A10_PANGI	0	Cytochrome P450 CYP73A100
trEMBL	tr\|L7Z967\|L7Z967_LONJA	0	Cinnamate 4-hydroxylase {ECO:0000313\|EMBL:AGE10593.1}
TAIR10	AT2G30490.1	3E-143	cinnamate-4-hydroxylase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	76576586	76578800	+
GWHAAZE00000005	mRNA	76576586	76578800	+
GWHAAZE00000005	exon	76576586	76577115	+
GWHAAZE00000005	exon	76578068	76578800	+
GWHAAZE00000005	CDS	76576586	76577115	+
GWHAAZE00000005	CDS	76578068	76578800	+

Transcript Sequence
>GWHTAAZE020119 ATGTCCCAAACCTATGGCCCTGTATTTCTACTCAAACTCGGCTCGAAAAACTTAGTTGTCGTATCAGAGCCAGAGTTAGCCAAACAAGTCCTCCACACCCAAGGGGTCGAGTTTGGGTCTCGCACTAGAAACGTTGTGTTTGATATATTCACGGGTAATGGTCAAAGCGTGGTCTTCACAACCTATGGTGATCATTGGCGCAAGATGCGACGTTTAATGACAGTCCCGTTTTTCACTAACAAAGTTGTTCACCAGTATAGTGACATGTGGGAGGAAGAAGTTGACCTAGTGGTTGATGATTTGAGGTCGAGTGAGAGTGCGAAGAAAGAAGGGATAGTGATTCGAAAGCGCTTACAATTGATGCTCTATAATATTATGTATCGTATGATGTTCGATGCCAAGTTCGAGTCACAAGATGACCCGTTGTTCATCGAGGCGACCAAGTTTAACTCAGAGAGGAGCCAGTTGGCTCAAAGCTTCGAGTACAATTATGGCGATTTCATCCCTTTGCTTAGACCATTCTTAAGGGGGGACATAATGGCTAAGAATGGAGATAAGCGTAAGATAAGTTGTGGCATTGATCACATAATAGATGCACAAATGAACGGAGAAATAACTGAAGAAAATGTGCTGTACATTGTGGAAAACATTAACGTAGCAGCAATAGAGACAACCCTATGGTCAATGGAGTGGGCCATAGCTGACCTAGTCAACCATCCGGCCGTCCAATGCAAGATCCGAGAAGAGATCTCAACCGTCCTTAAAGGAAACCCAGTCACGGAATCCAACCTTTACAAATTGCCATATTTACAAGCCACTATCAAAGAGACCCTCGCGCTACACACGGTACCTTTACTACTCCCACATATGAACCTCGAAGAGGCTACACTAGGCGGCTACACCATCCCTAAAGAGTCAAAGGTGGTGGTAAATGCTTGGTGGCTAGCCAACAACCCAGCATGGTGGAAAAACCCTAGCGAGTTCCGACCGGAGCGGTTCATGGAGGAGGAAGGCGGCACGGAGGCGGTTACCGGAGGTAAGGTGGATTTCCGGTACTTGCCGTTTGGAATGGGGCGGCGGAGCTGCCCGGGGTTCATGCTTGCACTTCCAATTCTAGGGCTTGCAATTGCAAAACTTATCATGAATTTCGAGATTAGGGTTCCTCCAGGGATCGGAGAGATTGATGTGAGTGAAAAAGGAGGGCAATTTAGCTTGCATATTTCAACACATTCCACAGTTGTCTTCAATCCTATTGTGGCATAA

Network for GWHGAAZE020097

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	2	176	3.40E-31
PF00067.23	p450	188	408	1.50E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00487	CYP73A	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Degradation of aromatic compounds	map01220
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.083
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.116
	SRR3591708	Shoot apex	0.036
	SRR3591709	Stem	0.293
	SRR3591710	White floral bud	0.704
	SRR3591711	White flower	0.874
	SRR3591712	Green floral bud	0.456
	SRR3591713	Yellow flower	6.552
SRP173429	SRR8316895	Juvenile bud stage	0.103
	SRR8316896	Juvenile bud stage	0.233
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.338
	SRR8316899	Complete white stage	0.556
	SRR8316903	Complete white stage	0.335
	SRR8316902	Silver flowering stage	0.118
	SRR8316904	Silver flowering stage	0.286
	SRR8316905	Silver flowering stage	0.279
	SRR8316906	Gold flowering stage	0.638
	SRR8316907	Gold flowering stage	0.511
	SRR8316908	Gold flowering stage	0.704
SRP132670	SRR6706286	Control	0.888
	SRR6706287	Light intensity 50%	0.334
	SRR6706288	Light intensity 20%	0.207
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.228
	CNS0095593	Slightly white alabastrum(diploid) 2	0.092
	CNS0095594	Slightly white alabastrum(diploid) 3	1.221
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.149
	CNS0095598	Silvery flower (diploied) 1	0.917
	CNS0095599	Silvery flower (diploied) 2	0.488
	CNS0095600	Silvery flower (diploied) 3	0.616
	CNS0095601	Golden flower (diploid) 1	0.355
	CNS0095602	Golden flower (diploid) 2	1.790
	CNS0095603	Golden flower (diploid) 3	1.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.047
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.132
	CNS0095610	Silvery flower (tetraploid) 1	0.613
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.105
	CNS0095613	Golden flower (tetraploid) 1	0.500
	CNS0095614	Golden flower (tetraploid) 2	0.718
	CNS0095615	Golden flower (tetraploid) 3	0.522
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.167
	CRR073299	Stem 3	0.032
	CRR073300	Leaf 1	0.194
	CRR073301	Leaf 2	0.025
	CRR073302	Leaf 3	0.385
	CRR073303	Juvenile bud 1	0.067
	CRR073304	Juvenile bud 2	0.260
	CRR073305	Juvenile bud 3	0.345
	CRR073306	Third green 1	0.220
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.031
	CRR073310	Second white 2	0.045
	CRR073311	Second white 3	0.084
	CRR073312	Silver flowering 1	0.667
	CRR073313	Silver flowering 2	0.717
	CRR073314	Silver flowering 3	0.606
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.105
	CRR073317	Gold flowering 3	0.006
	CRR073318	Tawny withering 1	23.768
	CRR073319	Tawny withering 2	20.733
	CRR073320	Tawny withering 3	9.336